Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04628 ATGTCATTTTCCTGTGCCAAAAGCTTCTTCCAAAGGTTCTGGGTTGATGAATTTCAAATGGGAAGTCTTGCCCATACCAGCTTTTTGTCCAATGATCTCCTGCCATCTCTTGGAGCCAGAATAAACCAGGAAACTAAACTAGGAAAATACATAATCTCCCCTTTCAATCCTCAGTATAGGGCTTGGGAGATGTTGCTGGTTGTTCTAGTCATATACTCAGCTTGGATTTGCCCGTTTGAGTTTGCCTTTCTGCCTTACAAGCAAAATGCACTATTCATCATTGACAACATTGTTAATGGCTTCTTTGCCATTGACATTGTGCTGACATTCTTTGTTGCATATCTAGATAGCCATTCTTATCTTCTAGTTGATGATCCAAAGAAAATTGCAGTCAGGTACATATGTACCTGGTTTGCTTTTGATGTATGCTCAACGGCACCACTTGAGTCCATCACCCTCATCTTCACTGATCATAGCTCTGAGCTTGGCTTCAAAGTTCTTAACATGTTTCGATTATGGCGTCTGAGACGAGTCAGTTCTCTGTTTGCAAGACTTGAAAAGGACATTCGCTTCAATTATTTCTGGATTAGGTGCACAAAACTCATTGCTGTAACCCTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATTTAATTGCAGATAGGTATCCAGATCCAAAAAGAACCTGGATTGGTGCAATGTACCCAAATTTTAAAGAAGAAAGTCTTTGGGACAGATATGTCACTGCAATATACTGGTCTATTGTCACACTTACTACCACTGGCTATGGGGATTTACATGCTGAGAACACAAGAGAGATGCTGTTTGACATCGCTTACATGATGTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTAGTACACTGGACCAGCCGCACCAGAAATTTTAAGGTCTACCTCTTCCAAGGAGTCTCCCATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCAGAGTATTTCCCCCCCAAGGAAGATGTGATACTACAAAATGAGTCTTCTACAGACCTTTATGTGCTGGTTTCAGGGGCAGTGAATACCATTCGCTACATTGATGGGCATGATCAAGTTCTCGGGAAGGCAATTGCAGTAGATGCATTTGGAGAGGTTGGAGTTTTGTATCGTATGCCACAGCCTTTCACAGTTCGGACCACGGAGCTTTCTCAGATTTTAAGACTCAACAGAACATCCTTAATGAATGTTTTACAGGCAAATCCAGGAGATGCACAAATTATAATTGATAACTTTTTAATGAGGTTAAAGGGGCATGAAGGGTTCGGCTTTGAATATCCATGTACAGATCGTGGAGTGGTTCTTCATGAACTACTTCACGGAGGTAATACTAGAGGAAGCTCTTCTCATGAGTGTTCAAGTAATGTCCATGGGCATTCATTAATGCATGGAGGAGAGTACATAAATATCAGAGACTCAGGGACCAGTGAGCATAAAGTGACTAATGATGCTCATTTAGTCACTAAAGGTAATATGATCCCTGAGGATGGAAAAAGAGATCCTCATACCCCTGCACACAAAGGAAATCTGGACATCGTTGAGATTTTGCTTGAAAGAGATGCAAATGCAAAGAACTCAAATGCCAAAGGGTGGACACAAAATGCTCCAGTACAACAGCTAAAAAACAAGAGCATTTCTGACCAAATAATGAGTTGTGAAAACGAGAAGAAATCAGATGAATATAGAATAGAGATTTTGGAGCCAGAATTCCTTAACCTTGGCAGGAATAGGTCAAGCAGAAACAGTAGACAAGATGGTATTAGACCTATCAACTTCCCATCAGAGAAAGTATACACAAACTCCAATTCAAGAAATTCTAACTGTCCAAGTGATAGGGACATGGCAAGGTTCATCAAGAAGAGAGTAACAATCCATTTGCTAAGCGGATGGAGAAGTACCTCACAAGGACAGCATGGAAAACTGATAATTCTACCCGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCAGCTTCAACCCTACAAAAGTATTTAGTAAGGAGAATGCAGAGATAGATGACATTAATGTCATTCGGGATGGTGATCATCTCTTTCTTCTTTGCAGTGATAGTGAAAATTTGAGTGCATGA 2151 0.4049 MSFSCAKSFFQRFWVDEFQMGSLAHTSFLSNDLLPSLGARINQETKLGKYIISPFNPQYRAWEMLLVVLVIYSAWICPFEFAFLPYKQNALFIIDNIVNGFFAIDIVLTFFVAYLDSHSYLLVDDPKKIAVRYICTWFAFDVCSTAPLESITLIFTDHSSELGFKVLNMFRLWRLRRVSSLFARLEKDIRFNYFWIRCTKLIAVTLFAVHCAGCFNYLIADRYPDPKRTWIGAMYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMMFNLGLTSYIIGNMTNLVVHWTSRTRNFKVYLFQGVSHDFLFQLVSEMEAEYFPPKEDVILQNESSTDLYVLVSGAVNTIRYIDGHDQVLGKAIAVDAFGEVGVLYRMPQPFTVRTTELSQILRLNRTSLMNVLQANPGDAQIIIDNFLMRLKGHEGFGFEYPCTDRGVVLHELLHGGNTRGSSSHECSSNVHGHSLMHGGEYINIRDSGTSEHKVTNDAHLVTKGNMIPEDGKRDPHTPAHKGNLDIVEILLERDANAKNSNAKGWTQNAPVQQLKNKSISDQIMSCENEKKSDEYRIEILEPEFLNLGRNRSSRNSRQDGIRPINFPSEKVYTNSNSRNSNCPSDRDMARFIKKRVTIHLLSGWRSTSQGQHGKLIILPDSLEELLKIAGEKFGSFNPTKVFSKENAEIDDINVIRDGDHLFLLCSDSENLSA. 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04628 716 MobiDBLite consensus disorder prediction 593 627 - -
Seca6g04628 716 ProSiteProfiles Ankyrin repeat profile. 513 545 IPR002110 GO:0005515
Seca6g04628 716 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca6g04628 716 FunFam Potassium channel KAT2 306 437 - -
Seca6g04628 716 Gene3D Jelly Rolls 306 436 IPR014710 -
Seca6g04628 716 ProSiteProfiles KHA domain profile. 638 716 IPR021789 -
Seca6g04628 716 SUPERFAMILY cAMP-binding domain-like 310 432 IPR018490 -
Seca6g04628 716 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca6g04628 716 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca6g04628 716 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca6g04628 716 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca6g04628 716 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca6g04628 716 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca6g04628 716 MobiDBLite consensus disorder prediction 593 628 - -
Seca6g04628 716 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Seca6g04628 716 FunFam Potassium channel KAT3 61 301 - -
Seca6g04628 716 Pfam KHA, dimerisation domain of potassium ion channel 637 706 IPR021789 -
Seca6g04628 716 ProSiteProfiles cAMP/cGMP binding motif profile. 313 432 IPR000595 -
Seca6g04628 716 CDD CAP_ED 313 426 IPR000595 -
Seca6g04628 716 Gene3D - 60 300 - -
Seca6g04628 716 SMART cnmp_10 313 430 IPR000595 -
Seca6g04628 716 Pfam Cyclic nucleotide-binding domain 333 417 IPR000595 -
Seca6g04628 716 PANTHER POTASSIUM CHANNEL AKT1 499 708 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04628 Seca-Chr6 113812529 113818430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04628 311 706 Ion Channels AT5G46240 37.121 3.22e-67 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04628 K21867 - gmx:100800340 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04628 6 113812529 113818430 Seca6g04628 6 113812529 113818430 ECH