Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04621 ATGTGGCAATTGGGGTTGGGTGCTGCCGAGGAATCGTACCCGCAACGCCCCGATGAGGCTGATTGTACCTACTATTTAAGAACCGGCTTCTGTGGCTTCGGCTCGCGGTGTCGGTTCAACCATCCTCGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGACTGCAGGGGACTATCCAGAACGATCAGGCCAGCCTGTGTGCCAGTTTTATATGAGGACGGGATCATGCAAATTTGGTGCGTCTTGCAAGTACCACCACCCTAGGCAGGCAGGAGGCACTGCTACCCCTGTGTCACTAAATTATTATGGATATCCATTGCGACCGGGTGAAAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACTTCCTGCTAGTGGTCAAATTCAAACACCATCACATGTTCCCCCAGTTTCGCCTTTACCTGTGCAGGTACCTTCACCAATGTATCCAACCATACAACCTCCATCCGGTCCTTCATCACAACAAATTGGTGTACTGGTTGCAAGGCCGCCTCTAATGCCTGGTTCGTTTGTCCAGAGCCCCTATGGGCCTGTGGTAGTGTCCCCTACAATGGTCCCTATGTCTGGCTGGGGTCCTTATCAGGTAGGTCAAGCATTTCTCTTTGACTGCTCAGTCAAATTATGTGGGCATTCGTTGAAGCTGTTAACTGTTGAGCTTTTGGCGCAGGCTCCTGCAACAAACCCTGTACTTCCTTCTAGTACTCCATCTAATGTTGGCTCAACACAGCTTTATGGGATAACTCAGCTACCTTCATCAGCAGCTGCATATACTGGATCTTATCAACCTTCTGGTTCCTCAGGTGGTCCTTCAAGCAGTAGCCCGAAGGAGCAGTCATACATGAATGCACCAAAAGTGAATGTGGTCCTTAGCCCTGCAGGTCTTCCATTGCGTCCGGGGGCACAACCTTGCACTCATTATGCACAGCGTGGAGTATGTAAGTTTGGTCCTGCATGCAAATTTGATCATTCTATGACTTCACTGAGTTATAGTCCATCTGCTTCTTCCCTTGCTGACATGCCAGTTGCACCCTATCCCGTGGGTTCATCAATTGGTACTCTTGCTCCGTCATCTTCATCATCAGAGTTGCAGCCTGAACTTACCACAGGATCCAACAAGGAGTCCATTCCATCCAGAATATCTTCATCAGTGAGCAGCACATTGACAGGATCGGTTGGCTTGACTTTGTCTACTGGTGGACCTGTTTCTCAATCAAGCACTCAACCATCTACTCAGAGTTCCAGTCCTTTAGCAGATGCCAATACCACAAGTAGCAATGTCTCTCACAACTCAAGCTAA 1353 0.4893 MWQLGLGAAEESYPQRPDEADCTYYLRTGFCGFGSRCRFNHPRDRGAVIGAARTAGDYPERSGQPVCQFYMRTGSCKFGASCKYHHPRQAGGTATPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPLPASGQIQTPSHVPPVSPLPVQVPSPMYPTIQPPSGPSSQQIGVLVARPPLMPGSFVQSPYGPVVVSPTMVPMSGWGPYQVGQAFLFDCSVKLCGHSLKLLTVELLAQAPATNPVLPSSTPSNVGSTQLYGITQLPSSAAAYTGSYQPSGSSGGPSSSSPKEQSYMNAPKVNVVLSPAGLPLRPGAQPCTHYAQRGVCKFGPACKFDHSMTSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELQPELTTGSNKESIPSRISSSVSSTLTGSVGLTLSTGGPVSQSSTQPSTQSSSPLADANTTSSNVSHNSS. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04621 450 SUPERFAMILY CCCH zinc finger 64 89 IPR036855 GO:0046872
Seca6g04621 450 ProSiteProfiles Zinc finger C3H1-type profile. 107 135 IPR000571 GO:0046872
Seca6g04621 450 SMART c3hfinal6 316 343 IPR000571 GO:0046872
Seca6g04621 450 SMART c3hfinal6 16 43 IPR000571 GO:0046872
Seca6g04621 450 SMART c3hfinal6 61 88 IPR000571 GO:0046872
Seca6g04621 450 SMART c3hfinal6 107 134 IPR000571 GO:0046872
Seca6g04621 450 ProSiteProfiles Zinc finger C3H1-type profile. 61 89 IPR000571 GO:0046872
Seca6g04621 450 SUPERFAMILY CCCH zinc finger 109 135 IPR036855 GO:0046872
Seca6g04621 450 ProSiteProfiles Zinc finger C3H1-type profile. 16 44 IPR000571 GO:0046872
Seca6g04621 450 Gene3D - 8 48 - -
Seca6g04621 450 ProSiteProfiles Zinc finger C3H1-type profile. 316 344 IPR000571 GO:0046872
Seca6g04621 450 Gene3D - 55 147 - -
Seca6g04621 450 SUPERFAMILY CCCH zinc finger 319 346 IPR036855 GO:0046872
Seca6g04621 450 MobiDBLite consensus disorder prediction 276 297 - -
Seca6g04621 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 109 133 IPR000571 GO:0046872
Seca6g04621 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 18 43 IPR000571 GO:0046872
Seca6g04621 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 88 IPR000571 GO:0046872
Seca6g04621 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 320 343 IPR000571 GO:0046872
Seca6g04621 450 PANTHER PROTEIN PHOSPHATASE RELATED 10 379 - -
Seca6g04621 450 MobiDBLite consensus disorder prediction 371 450 - -
Seca6g04621 450 SUPERFAMILY CCCH zinc finger 18 44 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04621 Seca-Chr6 113686421 113697603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04621 11 404 C2H2 Transcription Factor Family AT5G18550 49.654 5.31e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca6g04621 zf-CCCH 1.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04621 - - gmx:100812433 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04621 6 113686421 113697603 Seca6g04621 6 113686421 113697603 ECH
Seca12g00299 12 2688273 2693872 Seca6g04621 6 113686421 113697603 PCT