Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04620 ATGTCTACCTCTAGAACCTCAGATTCTTTCCTCAAAGGATATGAACCCAATCAAACCCAAATGAATTTATCTCTTCTTCAACGCAATACATCACCTTCTGGTGACAGAAGAGGCAGAAGAAAGCAAGCAGAACCTGGAAAGTTTCTTGGGGTAAGGAGACGCCCTTGGGGTAGATATGCTGCTGAAATCAGAGACCCTACAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTCATGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGTAGCCAAGCAAGAACCAACTTCATTTACTCTGATGATACTAATTTTCACAATGTTCTTCTTACTCCTATGGATATTCAAGCTCTTTTACCACCTTCACAGTTCCTCACTAACACTCAGAGTCAGAACACACATCAAACCAATCAAAATAGCCTGTCTCAGCTTGATACTTCCCACATTGAAAACCCCTCTCACTTGAACAATGAAACTGCATATGGGTCACCTCATGATCATGATAATTTCTTTTTCTCCAATGATTCTAACTCAGGCTATCTGGAATGCATAGTTCCTGGTAATTGTTTCAGACCTTCTTCCAGTACTTCAAACTGCAGGAAGAGCAATGTTAGTGCTTCAAGTGACCAAAAGGTTAGCACAGTTAACACAAACTCCATGCAGGGTCAATCACAATCATATTTTGACAACACTGCATTCTCTCAAGAACATTTCAACATGCAGACAGTGGCCTCTAACTATGCAGATTTTTCTTACCCAAGTCAAGGATTATGGGATTGCAATTCCAATGAACTTTCAGCTATGTTTAACAATCCATCAAGGAATGAAGATGGATGTATGTATGCATTATGTCCCATCAATGACAGTCCAAGCTATGGGCTAATGACTGAGGCTGTTTCTTCAACTACCTCTTCTCCATCATTTCCTCCATTTGGTGATGTTGACTTGGGATACTCACTCTTCTGA 984 0.4075 MSTSRTSDSFLKGYEPNQTQMNLSLLQRNTSPSGDRRGRRKQAEPGKFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMKGSQARTNFIYSDDTNFHNVLLTPMDIQALLPPSQFLTNTQSQNTHQTNQNSLSQLDTSHIENPSHLNNETAYGSPHDHDNFFFSNDSNSGYLECIVPGNCFRPSSSTSNCRKSNVSASSDQKVSTVNTNSMQGQSQSYFDNTAFSQEHFNMQTVASNYADFSYPSQGLWDCNSNELSAMFNNPSRNEDGCMYALCPINDSPSYGLMTEAVSSTTSSPSFPPFGDVDLGYSLF. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04620 327 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 227 - -
Seca6g04620 327 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Seca6g04620 327 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Seca6g04620 327 MobiDBLite consensus disorder prediction 1 32 - -
Seca6g04620 327 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Seca6g04620 327 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Seca6g04620 327 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Seca6g04620 327 FunFam Ethylene-responsive transcription factor 2 47 105 - -
Seca6g04620 327 MobiDBLite consensus disorder prediction 1 46 - -
Seca6g04620 327 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Seca6g04620 327 Pfam AP2 domain 48 96 IPR001471 GO:0003700|GO:0006355
Seca6g04620 327 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04620 Seca-Chr6 113681987 113682970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04620 1 320 AP2-EREBP Transcription Factor Family AT5G18560 40.650 7.46e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca6g04620 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04620 - - gmx:100812047 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00298 12 2684287 2685300 Seca6g04620 6 113681987 113682970 PCT