Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04616 ATGTTTGGTTACTGTCGCAGAGCCTTGCTCTGCCCAAACCTCTTTCCCATTATCAGTAACAGAACCACCACCTTACCAATCCCAACACCCTCCTATCTTCTTCTCCAATTTTTTTCCTCTTCCAAAGAAGAACACTCTTTTACCTTCAACTACCTCGTTAACAATTGTGGGCTCTCCGCAGAAACTGCTTCCAAAATCTCCAAACAAGTTCATCTCAACAACTCAGACAGACCCGACTCAGTCCTCGCCTTGTTCACAAGCCACGGCTTCTCAAACGCCCATTTACATGGAATCATCCGAACCTGCCCAAAACTTCTCTCTTTCGATCCCAACAAGACCGTTCTTCCCAAGTTCAATTTCTTTCTCTCAAAGGGTGCTTCAAGTTCCGACCTTGTGCAAATCGTGACCAAGAATCCATTCGTCTTGTATCAAAGCTTGGAGAATACCATTACCCCGTGCTATGATTTCGTAAAAAGATTCTTGCTTTCTGATGAGTTCACTTTGTCTTCTGTAAGACGCTGTGCTTGCTTGATTTATTCTAAGTACGTAGCACATAATATTCAACTGCTGCTTGAGATTGGGGTCTCTGAATCAAACGTTGCTTATATGCTTCGTAATTGGCCATCCCCAGTCACTGAGTCTCCTTCTTTGTTTAAGAAAGCAGTGGAAGAAGTAATGGAATTGGGATTCAACCCCAAGTCAACATTGTTCATTGTAGCAGTGCGTGCTAAGGTTATGAAAGTCATGTGGAAAAGGAGGATCAATTTGTATAATAAATGGGGTTGGTCTGAGGAAATTGCTGTTTCAGCATTTGTGAAGTATCCATGGTGCATGTTGGCATCAAGGAATAAAATTGAGGCAGTGATGGAGTTTTGGGTCAACCACATGGGTTGGGATTCTATGAAATTTGTGAATCGCTTTGAGGAGGAAGCCACTCAGCTGTTGAAGCTGTACACAGATGCAATGCAAGTGGCGCCTTTGAAATAA 987 0.4296 MFGYCRRALLCPNLFPIISNRTTTLPIPTPSYLLLQFFSSSKEEHSFTFNYLVNNCGLSAETASKISKQVHLNNSDRPDSVLALFTSHGFSNAHLHGIIRTCPKLLSFDPNKTVLPKFNFFLSKGASSSDLVQIVTKNPFVLYQSLENTITPCYDFVKRFLLSDEFTLSSVRRCACLIYSKYVAHNIQLLLEIGVSESNVAYMLRNWPSPVTESPSLFKKAVEEVMELGFNPKSTLFIVAVRAKVMKVMWKRRINLYNKWGWSEEIAVSAFVKYPWCMLASRNKIEAVMEFWVNHMGWDSMKFVNRFEEEATQLLKLYTDAMQVAPLK. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04616 328 Gene3D Transcription termination factor 3, mitochondrial 180 309 IPR038538 -
Seca6g04616 328 Gene3D Transcription termination factor 3, mitochondrial 43 179 IPR038538 -
Seca6g04616 328 PANTHER CGI-12 PROTEIN-RELATED 43 299 IPR003690 GO:0003690|GO:0006355
Seca6g04616 328 FunFam Uncharacterized protein 44 182 - -
Seca6g04616 328 SMART mt_12 201 231 IPR003690 GO:0003690|GO:0006355
Seca6g04616 328 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Seca6g04616 328 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Seca6g04616 328 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Seca6g04616 328 SMART mt_12 167 196 IPR003690 GO:0003690|GO:0006355
Seca6g04616 328 Pfam mTERF 181 301 IPR003690 GO:0003690|GO:0006355
Seca6g04616 328 Pfam mTERF 82 171 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04616 Seca-Chr6 113658716 113659856 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca6g04616 mTERF 8.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04616 K15032 - gmx:102663105 314.309