Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04614 ATGTTTGGTTACTGTCGCAGAGCCTTGCTCTGCCCAAACCTCAACCCCATTATCAGAATCAGAACCTCCTTACCAATCCCAGCACTCTCCTATCTTCTTCTCCAACCTTTTTCCTCTTCCAAAGAACACTCTTTTACCTTCAATTACCTTGTAAAAATTTGTGGGTTCTCCCCAGAAACGGCTTCCAGACTCTCTAACCGAGTTCGTCTCAACAACTCAGACAGACCCGACTCGGTCCTTGCCTTGTTCAGAAGCCACGGCTTCTCAAACGCTCAGTTATATGGGATCATCCGAACCTGCCCAAAACTTCTTACTTACGATCCCTACAAGACCATTCTTCCCAAGTTCAATTTCCTTCTCTCAAAGGGTGCTTCAAGTTCTGACCTTGTGCACATCGTGACCAAGAATCCCATAGTCCTGCGTTCAAGCTTGGAGAATACCATTTCCCCGTGTTATGATTTGGTCAAACGATTCAGACTTTCTGATGAGTCCACTTTGCTCTCTATAAAAGCTTATGCTAGCTTGATTTATTCTAAGAACCTAACACAGAATATTCAACTGCTGCTTGACAATGGGGTCCCTGAATCAAATGTTGCTTTTTTGTTTCGTCTTCATAATGGGTATCACACAATCACTGAGCATCATGCTGTGTTTAAGAAGGCAGTGGAAGAAGTAAAGGAATTGGGAATCAACCCCAACAAATCAACTTTCATTGTAGCAATGCGTGCTAAGATTGCGAAAGGATACCCGTGGCCGTGGGAAAGGAGGATCAATTTGTATAAAAAATGGGGTTGGTCTGAAGAAATTATTGTTTCAGCATTTGTGAGGTATCCATGGTGCATGCTGGCATCTGAGAATAAAATTAAGGCAGTGATGGAGTTTTGGGTCAACCACATGGGTTGGAGTTCTTTGATCCTCGCCAAACACCCATTACTAATTTTGTTGAGTTTGGAGAAAAGAGTAATTCCAAGGGCTCTTGTCTTGCAATTTCTTCAATCCAGAGGTTTGATTAAGGATGCAAAATCCATCAGTTATTATACAGAAATTATTGTTTCAGCATTTGTGAGGTATCCATGGTGCATGCTGGCATCTGATAATAAAATTGAGGCAGTGATGGAGTTTTGGGTCAACCACATGGGTTGGAGTTCTTTGATCCTCGCCAAACACCCATTACTAATTACGTTGAGTTTGGAGAAAAGAGTTATTCCAAGGGCTCTTGTCTTGCAATTTCTTCAAGCCAGAGGTTTGATTAAGGATGCAAAATCCATCAGTTATTATACAGTTAACGAGAAGAAGTTCTTGCAGAAATTTGTAAATTGCTTCGAGGAGGAAGCTTCTCAGCTGTTGAAGTTGTATGAAGGGAAAAATTATCTTCCAAGATAA 1383 0.415 MFGYCRRALLCPNLNPIIRIRTSLPIPALSYLLLQPFSSSKEHSFTFNYLVKICGFSPETASRLSNRVRLNNSDRPDSVLALFRSHGFSNAQLYGIIRTCPKLLTYDPYKTILPKFNFLLSKGASSSDLVHIVTKNPIVLRSSLENTISPCYDLVKRFRLSDESTLLSIKAYASLIYSKNLTQNIQLLLDNGVPESNVAFLFRLHNGYHTITEHHAVFKKAVEEVKELGINPNKSTFIVAMRAKIAKGYPWPWERRINLYKKWGWSEEIIVSAFVRYPWCMLASENKIKAVMEFWVNHMGWSSLILAKHPLLILLSLEKRVIPRALVLQFLQSRGLIKDAKSISYYTEIIVSAFVRYPWCMLASDNKIEAVMEFWVNHMGWSSLILAKHPLLITLSLEKRVIPRALVLQFLQARGLIKDAKSISYYTVNEKKFLQKFVNCFEEEASQLLKLYEGKNYLPR. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04614 460 Gene3D Transcription termination factor 3, mitochondrial 169 345 IPR038538 -
Seca6g04614 460 Gene3D Transcription termination factor 3, mitochondrial 346 451 IPR038538 -
Seca6g04614 460 FunFam Mitochondrial transcription termination factor-like 144 350 - -
Seca6g04614 460 PANTHER CGI-12 PROTEIN-RELATED 349 443 IPR003690 GO:0003690|GO:0006355
Seca6g04614 460 Pfam mTERF 352 433 IPR003690 GO:0003690|GO:0006355
Seca6g04614 460 Pfam mTERF 218 339 IPR003690 GO:0003690|GO:0006355
Seca6g04614 460 Pfam mTERF 80 231 IPR003690 GO:0003690|GO:0006355
Seca6g04614 460 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Seca6g04614 460 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Seca6g04614 460 SMART mt_12 383 417 IPR003690 GO:0003690|GO:0006355
Seca6g04614 460 SMART mt_12 351 382 IPR003690 GO:0003690|GO:0006355
Seca6g04614 460 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Seca6g04614 460 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04614 Seca-Chr6 113645980 113654692 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca6g04614 mTERF 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04614 K15032 - gmx:102663105 353.984