Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04605 ATGTCCGAAATTGAAATTCCTGAATATTTTGTTTGTCCCATTTCGTTTCAGATCATGAAGGACCCTGTGACAGCCATAACAGGCATAACATATGATAGAGAAAGCATTGAGAAGTGGTTACTAAGAGCCAAACATTGTGTTTGCCCTGTTACCAAGCAACCACTATCAAGAAATCCTGAGTCCTTAACTCCCAATCATACACTACGCAGGCTAATCCAAGCATGGTGTTCATCAAAAGGTGTTGATCGAATTCCAACCCCAAAAGCCCCTCTTGACAAAATCCAAATTCAGAAACTTGTCAAGGACCTTGATGTTCCTCATTGTTACCAAACAACATTGGTGAAGATGCATGATTTGGCTACACAGAGTGAGAGGAACAGAACATGCATGGCTGAAGCAGGGGTAGCAAAAGCTATGGTCATGGTGATTAAGAACAATTTCAAGGAAGGGAAAACAACTTGCTTAGAAGAAGCTCTAAGAGTTCTTCGTCTTCTTTGGAATCCAACCATGATGAAACCCCTTGTTGGAGAAGACTTGGACTTCATCAACTCGTTGACTTGGATTTTGCAACTTCACAATGTCAAGATGGTAAATGAAGTAATGCCCCTTTTGAAATTGACAATTGAAGTTGTGGATTCAACCCTGTTTGGAAGTTTAAGGCTTGAATTTTTTGAAGAAATGGTATGGGTATTGAAAAGGAGAGAACTTTCTCAACAGGCTATTAAGTCTGTTTTGCATGTTCTAATAGAAGCTTGCACATTGGGTAGAAACAGAAACAGGATAGTGGAAGCAGGTGCAGTAACAGAACTCATAGAACTTGAGCTTGAAAAACCAGAGAAGAACATAACTGAGCTTATATTTAACCTTTTGGCATATCTGTGCTCATGTGCTGATGGAAGAGCACAGGTTATTGGGCATGCAGCGGGAATTGCTATGATTTCAAAGAGGATTCTGAGGGTTTCTCCTGCCACTGATGACAGAGCAATTCAAATATTTTGTGTGATTGCTAAGTATTCAGCATCAAAGGGGGTGATTTTGGAGATGTTGAGGGTTGGAGCAGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGGTTCATATTTGAAAGAAAAAGCAAGAGATATCCTTAGGTTACACTCCACAGCTTGGAATAATTCCCCTTGCATACAAGTGTATTTGTTAACTAGACACCAAAGGTGA 1203 0.4023 MSEIEIPEYFVCPISFQIMKDPVTAITGITYDRESIEKWLLRAKHCVCPVTKQPLSRNPESLTPNHTLRRLIQAWCSSKGVDRIPTPKAPLDKIQIQKLVKDLDVPHCYQTTLVKMHDLATQSERNRTCMAEAGVAKAMVMVIKNNFKEGKTTCLEEALRVLRLLWNPTMMKPLVGEDLDFINSLTWILQLHNVKMVNEVMPLLKLTIEVVDSTLFGSLRLEFFEEMVWVLKRRELSQQAIKSVLHVLIEACTLGRNRNRIVEAGAVTELIELELEKPEKNITELIFNLLAYLCSCADGRAQVIGHAAGIAMISKRILRVSPATDDRAIQIFCVIAKYSASKGVILEMLRVGAVSKLCMVMQADCGSYLKEKARDILRLHSTAWNNSPCIQVYLLTRHQR. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04605 400 CDD RING-Ubox_PUB 7 56 IPR045210 -
Seca6g04605 400 Gene3D - 116 387 IPR011989 -
Seca6g04605 400 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Seca6g04605 400 SUPERFAMILY ARM repeat 118 367 IPR016024 -
Seca6g04605 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 82 IPR013083 -
Seca6g04605 400 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Seca6g04605 400 PANTHER WDSAM1 PROTEIN 2 391 IPR045185 GO:0061630
Seca6g04605 400 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Seca6g04605 400 SUPERFAMILY RING/U-box 4 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04605 Seca-Chr6 113596218 113597420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04605 3 390 U-box Gene Family AT2G35930 40.955 1.29e-100 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04605 - - gmx:100787426 572.778