Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04600 ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACAGTGGTAGTGTGGTGAAGGAAGTCGCCAAAAAAGATTCTTTTAAAGAAGCTTCTCTTCCTCAGTCTCATCACCCCAGCAGGGTTAGCTCAGATAAATCAAAATCACGGAGTGTCTCAGATCCTAAGAAGGAAACACCAGTTCCAAAGGATGGCCCAACTGCCCATATTGCCGCACAAACATTTACATTCCGAGAGCTTGCTGCTGCTACAAAGAATTTTAGGCCAGAATGTTTATTAGGTGAAGGAGGTTTTGGACGTGTTTACAAAGGTCACCTCGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTTGACCGAAATGGCCTTCAAGGAAATCGAGAGTTTTTGGTGGAAGTTCTCATGCTCAGCCTTTTACATCATCCAAATCTTGTGAACTTGATTGGTTATTGCGCTGATGGCGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGATCTTTGGAGGATCATTTACATGGTCAGATTGCATTCCTTTTAACTCAACCTTTCCCTCCAGATCTTCCTCCTGACAAGGAGCCTCTGGACTGGAACACTAGGATGAAAATAGCGGCTGGTGCAGCAAAGGGGTTGGAATATTTGCATGATAAGGCAAATCCTCCTGTGATTTATAGAGACTTAAAATCATCCAACATCCTCCTAGATGAGGGTTATCATCCCAAGTTATCAGATTTCGGGCTGGCAAAACTTGGTCCTGTTGGTGACAAGACTCATGTATCTACACGAGTAATGGGAACATATGGCTATTGTGCCCCAGAATATGCCATGACTGGTCAACTAACTCTGAAATCTGACGTCTACAGTTTTGGAGTTGTCTTCCTTGAACTTATTACTGGGCGCAAGGCTATAGATAATACACGTGCACATGGAGAGCACAATCTCGTTGCATGGGCACGACCTCTTTTTAAAGACCGTAGGAAGTTCCCCAAAATGGCTGACCCTCTACTTCAAGGGCGATATCCAATGCGAGGACTGTATCAAGCACTTGCAGTTGCAGCAATGTGTTTGCAGGAACAAGCTGCTACAAGGCCTCTTATTGGAGATGTTGTGACTGCTCTCACATATCTGGCCTCCCAGACATATGACCCAAATGCAGCCTGTCAGTCTAACAGGGTTGGTCCATCAACCCCTAGGAACAGAGATGACAGAAGAAGCATGGTGGATGGTGTGGATAGCCCGGACCGTGGACGGCTTGGCTCCCCTTCCACCCACAGAAACTCACCTGACTTCAGGAAGAGAGATGGTAGGGATCCAAGTGAGTTGGGCAGGATTGACACTGGTGGTGGGTCAGGGAGAAAATGGGGATTGGATGATTTAGAAAGACAGGAATCTCAGAGAGACAGCCCTGTAAATACTGGAAGAGCAAGAGAGACTCCAAGGAACCGTGACCTGGACAGAGAACGCGCGGTTGCAGAAGCAAAAGTTTGGGGTGAGAATTGGAGGGTGAAGAAGAGAGCAAATGTCATGGGTAGCTTTGATGCAACAAATGAGTGA 1560 0.4641 MGGCFPCFGSSNKEDSGSVVKEVAKKDSFKEASLPQSHHPSRVSSDKSKSRSVSDPKKETPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGHLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHGQIAFLLTQPFPPDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAACQSNRVGPSTPRNRDDRRSMVDGVDSPDRGRLGSPSTHRNSPDFRKRDGRDPSELGRIDTGGGSGRKWGLDDLERQESQRDSPVNTGRARETPRNRDLDRERAVAEAKVWGENWRVKKRANVMGSFDATNE. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04600 519 MobiDBLite consensus disorder prediction 42 64 - -
Seca6g04600 519 SMART serkin_6 88 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04600 519 CDD STKc_IRAK 94 376 - -
Seca6g04600 519 MobiDBLite consensus disorder prediction 28 69 - -
Seca6g04600 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Seca6g04600 519 MobiDBLite consensus disorder prediction 386 488 - -
Seca6g04600 519 MobiDBLite consensus disorder prediction 398 413 - -
Seca6g04600 519 ProSiteProfiles Protein kinase domain profile. 88 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04600 519 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Seca6g04600 519 SUPERFAMILY Protein kinase-like (PK-like) 70 375 IPR011009 -
Seca6g04600 519 FunFam Serine/threonine-protein kinase PBS1 165 393 - -
Seca6g04600 519 PANTHER OS07G0668900 PROTEIN 4 387 - -
Seca6g04600 519 Gene3D Transferase(Phosphotransferase) domain 1 165 394 - -
Seca6g04600 519 FunFam Serine/threonine-protein kinase PBS1 61 164 - -
Seca6g04600 519 MobiDBLite consensus disorder prediction 428 443 - -
Seca6g04600 519 Pfam Protein tyrosine and serine/threonine kinase 93 308 IPR001245 GO:0004672|GO:0006468
Seca6g04600 519 Gene3D Phosphorylase Kinase; domain 1 61 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04600 Seca-Chr6 113536463 113543995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04600 4 380 Glycoside Hydrolase AT3G07070 63.281 6.28e-166 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca6g04600 PK_Tyr_Ser-Thr 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04600 - - gmx:100814575 943.34