Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04599 ATGGCTAGACCTTCGAAGCCGGAGGTCTCTTCCGACGAAGCACTCTCCAACGCTTCGAGTTCGTCGGAGGAAGAGCAAGTAAATGAACAAATCAACGAAGAAGACAAGGAGGAGCTGGAGGCCGTGGCACGCTCTGCTAGTTCCGAAGACGACGAAGTCGCCGAGGACAATCCTCCAAATTCCGATGACGATCCTGCTTCCGCTGAAGATGGTGACAACGAGGAACAGGATGGAGACCATGTTGATCCTGAAATTAGCAAGCGTGAGAAGGCTAGATTAAAGGAAATGCAAAAAATGAAGAAACAGAAGGTTCAGGAGATATTGGATGCACAAAATGCGGCCATTGATGCTGATATGAACAATAGAGGAAAGGGGCGTCTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGTGATCAATCATCATCTCAAAAGAAATCACGCGGAAGGGGTCGGCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAATATCTAAAAGAAGAAGAAGATGGTGTAGCAAACACACGTCTAGTGACACAACCATCATGCATCCAAGGAAAAATGAGGGACTACCAACTGGCTGGTCTAAACTGGCTCATAAGATTATATGAGAATGGAATAAATGGAATTTTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTGTTAGGTTATTTGCATGAGTTCAGAGGGATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGCCCTGTTCTGCGTGCAGTAAAGTTCCTTGGCAACCCTGATGAAAGGAGACATATAAGGGAGGAATTGTTGGTTGCTGGAAAATTTGATGTTTGTGTTACAAGTTTTGAAATGGCAATCAAGGAGAAATCTGCTTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAACGAGAATTCCTTGCTGTCCAAAACTATGAGGCTATACAATACAAACTATCGTCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTTTGGTCTCTTCTCAACTTCCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAAGTTGTTCAACAATTACACAAGGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTACCACCAAAAAAGGAAACGATTCTTAAAGTAGGCATGTCTCAAATGCAGAAACAGTATTATAGAGCACTACTGCAAAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGTCTCCTGAATATAGCTATGCAACTACGTAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGACCATCTTATTACAAATGCTGGAAAAATGGTTCTTTTGGATAAATTACTTCCTAAATTGAAAGAGCGAGATTCTAGGGTCCTCATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGATATCAATACTGTCGAATAGATGGTAATACTGGTGGGGATGATCGCGATGCCTCCATTGAGGCTTTCAACAAACCGGGAAGTGAGAAATTTGTCTTCTTGTTGTCAACTCGAGCTGGAGGTCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGATAGTGACTGGAATCCACAAGTTGATTTGCAGGCTCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACAATTGAGGAGAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTGGCTGAACAGAAGACGGTAAATAAAGATGAGTTACTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAAGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACAGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAAAAGGTTAAAATGACATTTTATTGTCTTTGGCAACTATTTTATATTGCCTTGTATCAACCTTCTCTCTCCTGCCCCCTTCTTTTCTATTGA 2271 0.4104 MARPSKPEVSSDEALSNASSSSEEEQVNEQINEEDKEELEAVARSASSEDDEVAEDNPPNSDDDPASAEDGDNEEQDGDHVDPEISKREKARLKEMQKMKKQKVQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASKVTEEEEDEEYLKEEEDGVANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKVKMTFYCLWQLFYIALYQPSLSCPLLFY. 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04599 756 SMART ultradead3 191 383 IPR014001 -
Seca6g04599 756 CDD DEXHc_SMARCA1_SMARCA5 192 412 IPR044754 GO:0005524
Seca6g04599 756 MobiDBLite consensus disorder prediction 80 98 - -
Seca6g04599 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 500 651 IPR001650 -
Seca6g04599 756 MobiDBLite consensus disorder prediction 37 51 - -
Seca6g04599 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 372 IPR014001 -
Seca6g04599 756 MobiDBLite consensus disorder prediction 1 98 - -
Seca6g04599 756 MobiDBLite consensus disorder prediction 10 26 - -
Seca6g04599 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 410 IPR027417 -
Seca6g04599 756 FunFam Chromatin-remodeling complex ATPase 196 411 - -
Seca6g04599 756 Pfam Helicase conserved C-terminal domain 498 610 IPR001650 -
Seca6g04599 756 Pfam SNF2-related domain 208 475 IPR000330 GO:0005524|GO:0140658
Seca6g04599 756 Gene3D - 416 708 IPR027417 -
Seca6g04599 756 Gene3D - 196 411 IPR038718 -
Seca6g04599 756 MobiDBLite consensus disorder prediction 141 175 - -
Seca6g04599 756 Coils Coil 86 113 - -
Seca6g04599 756 MobiDBLite consensus disorder prediction 52 79 - -
Seca6g04599 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 693 IPR027417 -
Seca6g04599 756 SMART helicmild6 526 610 IPR001650 -
Seca6g04599 756 CDD SF2_C_SNF 496 621 - -
Seca6g04599 756 FunFam ISWI chromatin-remodeling complex ATPase CHR11 416 708 - -
Seca6g04599 756 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 102 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04599 Seca-Chr6 113526307 113534994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04599 216 637 RAD5 or RAD16-like Gene Family AT1G02670 27.129 2.45e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g04599 SNF2_N 2.7e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04599 K11654 - gmx:100809750 1313.52