Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04593 ATGGAAGGCTCTGTCATTGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCAAGCATTATAGGAGAAGATGCAGGATTCGAGCTCCCTGTTGCAATGAGGTTTACTCCTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCATGAACTCGTTCGCCAGGATGTTGAACAAGTTGTTTGTTCGGTTTGTGACACAGAGCAGCCTGCTGCTCAAGTTTGTACTAATTGTGGCGTCAGAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATGTAATTTGTTTACACATTATGCAGACGGGGAAGCAACAGTTTCATTGTGATGATTGTGGGATCTGCAGAGTTGGTGGACGTGAGAATTATTTCCACTGCAAGAAGTGCGGGTCTTGCTATTCAGTTAGTCTGCGCAATAATCATTATTGTGTGGAGAACTCCATGAGGCATCACTGCCCCATTTGTTATGAGTACCTTTTTGACTCATTGAAAGACACTACTGTTATGAAATGTGGTCACACAATGCATTGTGAATGCTACCATGAGATGATAAAGCGTGACAAGTACTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAGGGTATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTGATGCCTGATGATTATCGATATAGAAAGGTTTGGATACTCTGCAATGACTGCAATGACACAACCGAAGTTTACTTCCATATTATTGGGCAAAAATGTGGTCACTGCAGTTCTTACAATACTCGTGCAATTGCTCCTCCTGTTGTTCCTCAATGA 828 0.4275 MEGSVIERLDFGKMGYGCKHYRRRCRIRAPCCNEVYSCRHCHNEATSMLSNPFDRHELVRQDVEQVVCSVCDTEQPAAQVCTNCGVRMGEYFCNICKFFDDDVICLHIMQTGKQQFHCDDCGICRVGGRENYFHCKKCGSCYSVSLRNNHYCVENSMRHHCPICYEYLFDSLKDTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRVWKRIDEEIEATVMPDDYRYRKVWILCNDCNDTTEVYFHIIGQKCGHCSSYNTRAIAPPVVPQ. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04593 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 234 IPR013083 -
Seca6g04593 275 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Seca6g04593 275 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 272 - -
Seca6g04593 275 Pfam Zinc-ribbon 208 266 IPR039512 -
Seca6g04593 275 ProSiteProfiles Zinc finger CTCHY-type profile. 88 160 IPR017921 -
Seca6g04593 275 FunFam RING finger and CHY zinc finger domain-containing protein 1 232 274 - -
Seca6g04593 275 SMART ring_2 161 203 IPR001841 -
Seca6g04593 275 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Seca6g04593 275 SUPERFAMILY Zinc hairpin stack 89 154 IPR037275 -
Seca6g04593 275 Gene3D - 235 270 - -
Seca6g04593 275 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Seca6g04593 275 SUPERFAMILY RING/U-box 160 211 - -
Seca6g04593 275 Pfam Zinc finger, C3HC4 type (RING finger) 161 203 IPR018957 GO:0046872
Seca6g04593 275 ProSiteProfiles Zinc finger RING-type profile. 161 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04593 Seca-Chr6 113489385 113492891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04593 10 274 C2H2 Transcription Factor Family AT3G18290 37.037 3.41e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04593 K10144 - gmx:100812246 557.37