Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04585 ATGTTCCTTTTGGTCATTGTCTTCAATTCAGCACTCTCTGATGATGGAAAGTTCCTTCTGGCTGCACGGAAATGCAGACGTCCCACCTGTACAGATTATATCATCTCTCTAGATGCAGATGATATGTCAAGGGGAAACAACACCTATGTTGGGAAACTGAGATCGAATTTTCTAGGAACCAAGTTCACAATCTATGATGCCCAGCCACCTCATGCAGGGGCAAAGATTACAAAAAGTCGTTCAACTAGGCTAGTGAATCTAAAACAAGTTTCACCCAAGGTCCCAACAGGCAACTATCCAGTGGCACACATCTCATATGAATTGAATGTGCTAGGCTCTAGGGGGCCTAGGAGAATGAATTGTGTCATGGATTCCATTCCTGCCTCTTCAATTGAACCAGGAGGTGTAGCCCCTACGCAGACTGAGTTTTCTCTTAACAACATAGATATATTTCCCTCATTCCCTTTTTTTCGGTCAAAATCAAACCGTGCCGAAAACTCCCTATCTGGACCCCTTGGTGATCAAAATCAAAAGGATGGGATGCTTGTATTGAAAAACAAGGCTCCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCGTGGGCGGGTGACAATTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAATGGACCTGCGGGATCAGAACATGATAAGATTATCCTACAGTTTGGTAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTATCCCATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCATGTGAATGA 819 0.4408 MFLLVIVFNSALSDDGKFLLAARKCRRPTCTDYIISLDADDMSRGNNTYVGKLRSNFLGTKFTIYDAQPPHAGAKITKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSIPASSIEPGGVAPTQTEFSLNNIDIFPSFPFFRSKSNRAENSLSGPLGDQNQKDGMLVLKNKAPRWHEQLQCWCLNFRGRVTIASVKNFQLVASAENGPAGSEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04585 272 ProSitePatterns Tub family signature 2. 257 272 IPR018066 -
Seca6g04585 272 Pfam Tub family 10 267 IPR000007 -
Seca6g04585 272 PANTHER TUBBY-RELATED 12 270 - -
Seca6g04585 272 ProSitePatterns Tub family signature 1. 202 215 IPR018066 -
Seca6g04585 272 PRINTS Tubby superfamily signature 184 201 IPR000007 -
Seca6g04585 272 PRINTS Tubby superfamily signature 33 49 IPR000007 -
Seca6g04585 272 PRINTS Tubby superfamily signature 202 218 IPR000007 -
Seca6g04585 272 PRINTS Tubby superfamily signature 229 248 IPR000007 -
Seca6g04585 272 PRINTS Tubby superfamily signature 49 73 IPR000007 -
Seca6g04585 272 PRINTS Tubby superfamily signature 250 272 IPR000007 -
Seca6g04585 272 PRINTS Tubby superfamily signature 98 125 IPR000007 -
Seca6g04585 272 Gene3D Tubby Protein; Chain A 3 272 IPR025659 -
Seca6g04585 272 SUPERFAMILY Tubby C-terminal domain-like 10 272 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04585 Seca-Chr6 113434570 113436567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04585 10 272 TUB Transcription Factor Family AT2G47900 77.186 8.54e-147 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca6g04585 Tub 3.8e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04585 K19600 - gmx:100778346 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04585 6 113434570 113436567 Seca6g04585 6 113434570 113436567 ECH