Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04584 ATGGCTATAATCAGGAACCTAATCGGGGAGATGAGATCGAGGTCGCAGAGGGTGGTGGTGGAAGAGGAGGAAGTGGTGGTGGTTGGCGATAGCATGAGGCAGAGTTGTTGGGCGAACATGCCTCAGGAGCTACTCCGTGAAGTGCTCCTCCGAATCGAGGCATCGGAGGACACGTGGCCGCCGAGAAAGAGCGTGGTGGCGTGTGCCGGAGTGTGCCGGAGCTGGAGGGAGATCACAAAGGACATCGTCAAAACACCTGAACTTTCTGCTAAGATAACCTTCCCCATCTCCGTTAAGCAGCCTGGTCCAAGGGAACAACTTGTCCAGTGCTTTATAAAGCGCAACCGGTCCACCCAAACATATTATTTGTTTCTCAGTTTAACTAGTAGTAAGTATATATAA 402 0.5149 MAIIRNLIGEMRSRSQRVVVEEEEVVVVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVACAGVCRSWREITKDIVKTPELSAKITFPISVKQPGPREQLVQCFIKRNRSTQTYYLFLSLTSSKYI. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04584 133 Pfam F-box domain 37 84 IPR001810 GO:0005515
Seca6g04584 133 Gene3D - 30 88 - -
Seca6g04584 133 SUPERFAMILY Tubby C-terminal domain-like 86 129 IPR025659 -
Seca6g04584 133 CDD F-box_AtTLP-like 37 81 - -
Seca6g04584 133 Pfam Tub family 98 129 IPR000007 -
Seca6g04584 133 PANTHER TUBBY-RELATED 19 129 - -
Seca6g04584 133 SUPERFAMILY F-box domain 32 81 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04584 Seca-Chr6 113432562 113434468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04584 8 130 TUB Transcription Factor Family AT2G47900 66.667 3.92e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca6g04584 F-box 7.1e-10 CL0271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04584 K19600 - gmx:100778346 206.068