Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04577 ATGAACCAGTACCATATCTACGAAGCCATTGGTCGCGGCAGATACTCTACTGTGTACAAAGGCAGGAAGAAGAAGACCATTGAGTACTTTGCCATCAAAAGCGTCGATAAATCGCAGAAAACCAAGGTTCTTCAAGAGGTCAGGATTCTTCATTCTTTAGATCATAAGAATGTGCTGAAGTTTTATTCTTGGTATGAAACTTCTGCTCACCTATGGTTGGTTTTGGAGTATTGTGTTGGAGGTGATCTCCTTTCCATATTGCGGCAGGATAGCCAACTTCCTGAAGATTCGGTTCATGACCTTGCTTATGACTTAGTCAAAGCTTTACAGTTTTTACATTCAATTGGAATAATTTACTGTGATCTCAAACCATCAAATATTCTACTAGATGAAAATGGATGTGCAAAGCTATGTGATTTCGGATTGGCTAGGAAGTTGAAAGATATATCAAAAACTCCTTCTTCCTTGTTGCCTCAGGCAAAACGTGGAACACCCTCTTACATGGCTCCGGAGCTTTTTGAGGATGGTGGAGTCCATTCTTATGCTTCTGATTTCTGGGCCCTAGGTTGTGTACTATATGAATGTTATGCCGGGAGGCCTCCTTTTGTGGGAAGAGAATTCACTCAGCTTGTAAAATCCATCATTTCAGATCCAACTCCACCTCTCCCTGGCAATCCAAGTCGACCTTTTGTCAATTTAATTAATTCTCTGTTGGTAAAAGATCCAGCTGAAAGAATACAGTGGCCTGAGCTTTGTGGACATGCCTTCTGGAAAACCAAATTTACTCTGTTGCCTCTGCCTCCTCAACCTGCGCTTGATGATATGTTAGAGCTACATGCTAAACCATGCTTATCAGAACGTAATGGAGATAAATCTTCTCATAACAGGACCCCTCCCAAATATCGTGAAAGAGATGTGAAAGGGGTGCTAAAGAAGGATGAGAATTCTGTTTTAGGATCTCGAGGCATTGAGACACCAACAAGGGCAACACCAAATGGTCACAGAACTCAGACAAAGGGTTCTGGCAGAACAATAGAGGGGAAGCAGAAAGATTCTTCCAATATTAGCAAGGGTGTGAATCTTTTGAGACTGTCAAAAATAGCAAAATCAAATTTACAGAAAGAAAATGAGAAAGAAAACTATCGACGCCCCTTACCTAATAACTCTGAGAATGATTCTGAAGTTAAAATTGAAAACACTGACATGGAACTTGATTTTAATGAGAATAGTGAAGATGATGCTCATGAAGAAACCGATTGCTCTGAACATACAGCTTCTGTGCCTGATGAGAAAATGGACAATCATTTCCAGAATCAGGGAAAAGCAGAGGAGATTGAAAATAATATGCATCCGTTGGACACCCCATCTGTTGTTAGCACTCCTGTCTCAGATGATGCAAGGTCATTCGACCAGGAGTCAACTCCTGACCGTCCTGACATATCTGCCATTTCACCCAGTGTTAGCCCTCAAGTGAGGAAACATAAACCTAGAGAAGACTCTGCATCTGGTCTTGACTCCGATTCTTCAAGGTCGTCTAACAACCTTTCCCAGGTTCTTTGGCATCCATCTGATCTCTCTGTCAGACCTGTCATGCCCAGCAGAAAGGTTGATAAAGTCTCAGAAGTCATTCCTTCACTTCCTTTTGAAGCGTTGCAAGCATCTGATTTTGTCAAGATGCCTAAAGAGCAATTGGAGGCAGTACACAACCGAATTTTAGCCATTTTGAATGGGAATACCAGCATTGGAGAGAAACAGAATGTGATTAGGTACCTCGAGATGTTGAGCAGTAATCCTGATGCAGCCAATATCTTGACCAACGGTCCAATAATGCTCATGCTTGTAAAATTGCTACGTCAATCCAAGGCATCAGCTTTGCGTGTTCAACTTGCTTCACTGATCGGTTTGTTGATTAGGCACTCTACTTTTGTTGATGACAGTTTGGCCAATTCTGGAATTTTAGGTTCATTGACGGATGGCCTTAGAGACAAACAGGAAAAAGTGAGGAGGTTTTCCATGGCTGCTTTGGGTGAGTTGCTATTTTATATATCCACTCAAAATGCGGACTGCAGAGATAATAATCAACTTGAATCTCCATCAAAGGACAATAGGACTACGTCTGGCTGGCAGGTTCCAAATTCATTAATTTCCTTTGTGACTTCAATGTTGAGGAAAGGGGAGGATGACATAACTCAATTGTATGCATTGAGAACAATTGAGAATATTTGCAGTCAAGGAGGGTTCTGGGTGGGACGTTTGGCCAGTCAAGATGTTATTAGTAATCTCTGTTATATCTATAGGGCAGCAGGGAAACAAGAAAGCATGAGGCTTACTGCAGGGTCATGTTTGGTGCGTTTAGTTCGTTTTAATCCTCCTAGCATTCAGTCGGTTATCGAGAAACTCTCATTCAAGGACCTAGCTTCTGCTCTTGTCAAGGGCAGTCCACGAGAGCAGCAAATCAGCTTAAATCTTCTTAACATGGCAATGCTAGGAAGTCATATGTTCACAAATATAGGAAGATACCTTGTACCACTTGCGGAGGATAAGAATCTAATCCCAAGCATTTGGGCTCTTGTGGAGCAGGGTACTGAAGTTTTAAAAGGAAAGGCACTTGTGTTTGTGGCTCTCCTCTGTAAGCACGGTAGGAGGTGGCTTCCACACTTCTTTTGTAGCCAAAAGTTACTTTCCGTGGTAGACAGGCTGGGAAAAGAGAAGGATGCCTATGTGCGGCAGTGTTTAGAGGCGTTTGTGCATATTGTGGCATCTACCATTCCAGGTTTGCTGGATATAATAACAGCGGATATCCAGCAAATGATGGGAGGAAGGCGCCATGGACATATCTCTGCCCTTACCAGCAGATCTACTCCAAAAACCAACATTCATTTGTTTCCTGTTGTTCTCCATCTTCTTGGAAGTTCAACTTTTAAGCACAAAGTGGTGACACTTCAAGTCCTACGGCAGTTGGCCAATCTAATTAAACTCGTGGAGACACCGTTTCAGGGAAGAGATGATTTCCAAATAACCCTTCTTCGAATTTTGGAGTCTCTGACGGAGGAATCTACTGTGATTCTTGGCAATCCTGACATTTTCATACGTGAAATCCTCCCGAGTTTAACAGTTCTCTACAAGGGTAACAAGGATGGCGATGCCAGATTTTTGTGCCTTAAAATTTTTTTCGATGTGATGATTATTCTTTTGAGTGAACCAATCGAAGAAGAGCAAAGATTGAAGGATCTGAAATTCATATCAAATACACGTTTTCTTCCTCTCTACCCGACCTTGATCGAAGATGAAGACCCTATTCCTATCTATGCACAGAAGCTTCTTGTCATGCTACTAGAGTTCAGTTTTATTACAATTCCAGACATTCTACATCTGAAGACGATTTCTCAATGCTTTGAGTTCTTGCTTGGTGATCTATCAAATGCAAATGTGAATAATGTTAAGCTCTGTCTTGCTCTGGCTTCTGCTCCTGAAATGGAGTCCAAGTTACTCTCTCAATTGAAAGTTGTTAGGAGGATTGGCAACTTTCTTGAGTTTATTTGTGCAAAGGGTATGGAAGATTTGCTGGAACCAACTCTTGGGCTGTGTAGGGCTTTTCTAGCACGTTCAGTCTGCTGTGCAAAAGGTTTCAGCTACACAACAGAACCAATTCTCTTAGGTGACTGTCCTCCCGAGGCAAGTGGTGTTGTTGATCCCCAGCAATGCATAAGAGATATAGCGGACTTTGGAAGCAATGTTGGAGTCTTGCTAGCGTTGAGTGCCTCTGCAGAAACCAATATTGCTGATATAGGTTCTGAATGTGTAGTTTTATTGCTTAAGGCAGCTCCTAGAGAAGCCACCACTGGTCTACTAACCAATCTCCCCAAGGTCAGTGTAATCCTAGAGTCCTGGAGTAAAGGCATCCCTCAGTTAGTTGTGCAGAGAATGCTTCGTGCTCTAGGTTATGCTTGCAAGCAGTACTTACTGCATGCTATGATATTATCAATATCCATACCAGAGATTTCAAGAATTGAAGTAATAGTTTCTGAACTCAAGAGTTCAGGTGTGCCTGCTTTAGCCAAAACTGCTGGGTTGGCAGCCTTGGAATTGCAGCGGCTGCCTCGCTGCATTTGA 4113 0.423 MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKTKVLQEVRILHSLDHKNVLKFYSWYETSAHLWLVLEYCVGGDLLSILRQDSQLPEDSVHDLAYDLVKALQFLHSIGIIYCDLKPSNILLDENGCAKLCDFGLARKLKDISKTPSSLLPQAKRGTPSYMAPELFEDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELCGHAFWKTKFTLLPLPPQPALDDMLELHAKPCLSERNGDKSSHNRTPPKYRERDVKGVLKKDENSVLGSRGIETPTRATPNGHRTQTKGSGRTIEGKQKDSSNISKGVNLLRLSKIAKSNLQKENEKENYRRPLPNNSENDSEVKIENTDMELDFNENSEDDAHEETDCSEHTASVPDEKMDNHFQNQGKAEEIENNMHPLDTPSVVSTPVSDDARSFDQESTPDRPDISAISPSVSPQVRKHKPREDSASGLDSDSSRSSNNLSQVLWHPSDLSVRPVMPSRKVDKVSEVIPSLPFEALQASDFVKMPKEQLEAVHNRILAILNGNTSIGEKQNVIRYLEMLSSNPDAANILTNGPIMLMLVKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLANSGILGSLTDGLRDKQEKVRRFSMAALGELLFYISTQNADCRDNNQLESPSKDNRTTSGWQVPNSLISFVTSMLRKGEDDITQLYALRTIENICSQGGFWVGRLASQDVISNLCYIYRAAGKQESMRLTAGSCLVRLVRFNPPSIQSVIEKLSFKDLASALVKGSPREQQISLNLLNMAMLGSHMFTNIGRYLVPLAEDKNLIPSIWALVEQGTEVLKGKALVFVALLCKHGRRWLPHFFCSQKLLSVVDRLGKEKDAYVRQCLEAFVHIVASTIPGLLDIITADIQQMMGGRRHGHISALTSRSTPKTNIHLFPVVLHLLGSSTFKHKVVTLQVLRQLANLIKLVETPFQGRDDFQITLLRILESLTEESTVILGNPDIFIREILPSLTVLYKGNKDGDARFLCLKIFFDVMIILLSEPIEEEQRLKDLKFISNTRFLPLYPTLIEDEDPIPIYAQKLLVMLLEFSFITIPDILHLKTISQCFEFLLGDLSNANVNNVKLCLALASAPEMESKLLSQLKVVRRIGNFLEFICAKGMEDLLEPTLGLCRAFLARSVCCAKGFSYTTEPILLGDCPPEASGVVDPQQCIRDIADFGSNVGVLLALSASAETNIADIGSECVVLLLKAAPREATTGLLTNLPKVSVILESWSKGIPQLVVQRMLRALGYACKQYLLHAMILSISIPEISRIEVIVSELKSSGVPALAKTAGLAALELQRLPRCI. 1371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04577 1370 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04577 1370 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca6g04577 1370 MobiDBLite consensus disorder prediction 283 357 - -
Seca6g04577 1370 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04577 1370 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04577 1370 SUPERFAMILY ARM repeat 567 920 IPR016024 -
Seca6g04577 1370 MobiDBLite consensus disorder prediction 409 433 - -
Seca6g04577 1370 CDD STKc_ULK4 3 257 - -
Seca6g04577 1370 MobiDBLite consensus disorder prediction 452 468 - -
Seca6g04577 1370 Gene3D - 560 921 IPR011989 -
Seca6g04577 1370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Seca6g04577 1370 MobiDBLite consensus disorder prediction 370 385 - -
Seca6g04577 1370 MobiDBLite consensus disorder prediction 283 318 - -
Seca6g04577 1370 SUPERFAMILY Protein kinase-like (PK-like) 1 258 IPR011009 -
Seca6g04577 1370 MobiDBLite consensus disorder prediction 370 397 - -
Seca6g04577 1370 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1367 IPR044591 GO:0000911|GO:0000914|GO:0008017
Seca6g04577 1370 MobiDBLite consensus disorder prediction 416 433 - -
Seca6g04577 1370 FunFam Aurora kinase A 1 81 - -
Seca6g04577 1370 Gene3D Transferase(Phosphotransferase) domain 1 1 297 - -
Seca6g04577 1370 MobiDBLite consensus disorder prediction 446 517 - -
Seca6g04577 1370 MobiDBLite consensus disorder prediction 320 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04577 Seca-Chr6 113387411 113394374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04577 1 258 AGC Kinase Gene Family AT1G45160 32.990 4.30e-37 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Seca6g04577 Pkinase 2.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04577 K17545 - gmx:100817590 2458.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04577 6 113387411 113394374 Seca6g04577 6 113387411 113394374 ECH