Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04576 ATGGTGACTAACATAGATTCCCAGGGAGCCATGATGATGCAAGAGGCAAATTTAATGGCGAAACAGGTTTCTGCAGATGGGTTCAAATCAGTTCCTGTTGATGATGCATCAAGACATGGAATCTCTTTTGCTATGGGGCAGGAAGGGAATGAGAGTTTATCGAATAACTTGCCACCTCCAAAATATACAATGTCAGAGAGATGGATAATGGATCAGCAGAAAAAGAGGCTTCTAGTTAAGCAAAATTGGGTACAAAAACTGCAAAAAACAAAGCAAAGAATGGTTACAAGTTTTCACCAGTTAAAGGAAAATGTGAACTCGTCCGAAGATATATCCACTAAAACAAAAAGTGTCATAGACTTGAAGAAACTGCAGCTATTAGAACTCCAACGTCGTCTCCGTAGTGATTTTCTGAATGAATTTTTCAAACCGATTACAACTGAGATGGAACATTTGAAATCAATAAAGAAACATAGGCATGGTAGAAGGATCAAACAACTTGAAAAGTATGAACAGAAAATGAAGGAAGAGCGCCAGAAAAGAATTCGTGAGAGACAGAAGGAGTTTTTCAGTGAGATTGAAGTCCACAAGGAAAGACTTGATGATGTATTCAAAATCAAGAGGGAACGGTGGAAAGGTTTCAATAGATATGTGAAAGAGTTCCATAAAAGAAAAGAACGTATTCATCGCGAAAAGATTGATAGAATCCAGCGGGAAAAGATTAATTTGTTGAAAATAAATGATGTGGAGGGCTATCTACGAATTGTGCAAGATGCAAAATCTGACCGTGTGAAGCAACTTCTTAAAGAGACTGAGAAGTATCTTCAAAAGCTTGGGTCCAAGCTACAAGAAGCAAAGGCTGTAGCAGGTCGTTTTGAGCATGATGTCGATGAGGCAGAAAGTGGCAGTTTTCTTGAGAAGAGTGAAAATAATCTTGAAAATGAGGATGAAACTGATCAGGCAAAGCATTATATGGAAAGCAATGAGAAGTATTATATGATGGCGCACAGTGTAAAGGAGAGCATTGCAGAGCAGCCATCTTGTTTGCAGGGTGGAAAATTGAGGGAGTATCAAATGAATGGCCTGAGGTGGCTGGTTTCCCTATACAACAATCATTTGAATGGAATCCTTGCTGATGAAATGGGACTGGGTAAAACTGTCCAGGTTATTTCTCTGATTTGCTACCTAATGGAGACAAAAAATGATAGGGGGCCATTTCTTGTGGTTGTGCCCTCTTCAGTTCTACCTGGTTGGGATTCAGAAATCAACTTTTGGGCTCCTGGTATTCACAAAATTGTCTATGCTGGACCACCAGAGGAGCGACGTCGGTTATTCAAGGAAAGGATTGTTCACCAAAAATTTAATGTCCTTTTGACAACATATGAATATCTGATGAACAAGCATGATAGACCAAAGCTCAGCAAAATTCATTGGCATTATGTAATAATTGATGAAGGTCACCGCATAAAAAATGCTTCTTGCAAGTTGAATGCTGACTTGAAACTCTATCAGAGCTCTCACAGATTGTTGTTAACTGGAACACCATTGCAGAACAATCTTGAGGAGCTGTGGGCACTCCTGAACTTCTTGTTACCAAACATATTCAATTCATCAGAGGACTTTTCTCAATGGTTTAATAAGCCATTCGAGAGTTCTGGAGATAATTCGCCTGATGAAGCCTTACTGTCTGAGGAGGAGAATCTCTTGATCATAAATCGTCTGCACCAAGTTCTGAGGCCATTTGTACTTCGTAGGCTAAAACACAAGGTTGAAAATGAGCTTCCTGAAAAAATTGAGAGACTTGTAAGATGTGAGGCGTCTGCATATCAGAAACTTTTGATGAAGAGGGTGGAAGAAAATCTTGGTTCTATTGGCACTACAAAGGCTCGATCAGTACACAACTCTGTCATGGAGCTTCGTAACATATGCAATCATCCATATCTCAGTCATCTTCATGTAGAGGAGGTAGATAACTTTATACCTAAGCATTATCTGCCGCCAATTGTTAGACTTTGTGGGAAGCTTGAGATGTTGGACCGTATATTGCCTAAATTAAAGGATGCGGATCATCGGGTTCTTTTCTTTTCAACAATGACCAGGCTTCTTGATGTTATGGAGGAATACTTAACCCTAAAACAGCATCGTTACCTTCGATTGGATGGACATACTTCAGGAAATGATCGTGGTGCTCTAATTGAACGGTTTAACCAACCAGATTCTCCGTATTTTATTTTCTTACTCAGCATTCGAGCTGGTGGTGTTGGAGTAAATCTTCAAGCTGCTGATACAGTTATCATATTTGACACAGACTGGAATCCACAGGTTGATCTACAAGCCCAGGCAAGGGCTCATAGAATTGGTCAAAAGAAGGATGTTCTGGTTCTTCGATTTGAAACAGTTCAAACTGTTGAAGAACAAGTCAGGGCAGCAGCTGAGCATAAACTGGGTGTTGCTAATCAGAGCATCACGGCTGGTTTTTTTGACAATAATACAAGTGCTAAAGATCGAAGAGAATATTTGGAATCCCTCCTACGTGAGTGTAAGAAAGAGGAAGCTGCACCTGTTTTGGATGATGATGCTCTAAATGATCTCTTAGCACGCAGTGAAACAGAGTTAGATGTTTTTGAGGCTATTGACAAAAAAAGGCGGGAAGATGAGATGGCTACATGGAACAAATTAGTTGCACTTGACGGTTCTGAGCAAATTCCTCCCCTTCCTTCTCGACTTGTCACTGATGAAGACTTGAAACAATTTTATGAAGTAATGAAGATATCTGATGTGCCCAAGGGTGATGTAGCATCTAACGGAGTAAAGCGGAAGAGTGTGTATCTCGGGGGTCTCGATACTCAACAATATGGCAGGGGAAAACGTGCAAGAGAGGTGCGATCCTATGAAGAGCAATGGACAGAGGAGGAGTTTGACAAGATGTGTCAGGCTGAATCTCCTGAATCACTCAAATTAAAGGAAGTGACAGAGACAAATTGCCCAACAAATGCTTCCTGCTCTGCTGTATCTGCTTCTGTCACAGATCCTGCAGCTGTGCCTCCAGTGGCCCCATTGCTGTCATCTGCGGGGAGTTTTCCAGTACAGCAAGTCAAAGAGATAACACCACCTGCTAAACGTGGACGTGGAAGGCCAAGAAGAATAACTTCAGATAAGTCACCAGCTGCTCTGGTTCCTCTGGCAATTGCTGGAACTGTTGAAGTGGACATGCAGCTACAGAAAGGAACTTTGTCTGGACATCTAACATCGTTGACTCCTGAATCTAATACGCATTCTTCTGAAGTCACTGGTGTAAGTAGACCTGTGCAGCAGCCTGATACTGGGGTTGCTCCTAACTTAAATCCTGCCATTCCTATACTTACTGTTACAACCAATTCTCAGTCAGATGCGACTTCTGTTTCTGCACCTATACAAACAAGAGGACAAGGGCAGAAAACTCAAAGTGGAGGGGAAGCAACTAGATGTAGAGGGAAGAAACAGGTTGTGGTGTCACCTCCTGTCCCTGGTGGTCCTGTTGGTCCTGATTTGAAGGTTAATGAGCAATTGAAACCTAATTCCATGAATCTATCTACCGATCAAGCTGTCTCCCAGAGTGAAACTGTTTCCTGCATTACTCCAGTACACCATCCAACTACTATATCAGGCTCTGCTTCTTTAAGCTGTGGAAAGGATAACCTTATAGGTGTTGGGACTGCTTTGAATTCTCTGCAATCCCTTCCTTTGTCCTCTATTACTTCTTTGCCTCAAACTGTGCCCACTCATCCCCCTGTATCGATACAAAATAAGGGGCAAAATCGGAAGTCACAAAATGGATCAGGAGCTCCCCAGCGCAGGGGAAAGAAACAGGCAACAACATCAATTCCAGATGTTTCTGCTGGTCGGGATTTGCATCTAACTCCTAATCTTCAAATTCCATCAGACAGTATGACACTTGATAATGCCACTGATTTAAAAAGCTTGCAAGAGAACTATGTTCAGGAATCAAAATGTGTTATCCAGGATCAGGTATCGCATAGCTTTGGTGATCAGGATTTAAAATCATCAGAAGGATCAAATGATTTAGCCAAGAAGACAGTTGTCTTGTCATCAATTCAAGATAATACTACCAAATCTCCTGGGCCAGAAATAGAGAAAGTTCAGGTTTCTGATGTGCATGATTCTATTTCTGATACTTTATCCAAAACTACAATTCTTCAGAATTCAGTGAATGAAAATTTCTCTGTCCCAACACTACCTGTTGCTGAGGTGACAAAGGACCAAAGTTTAAAGGCCAAAACTCATCAGTCTGCTGAAGCTTCAAAGGTTGTCCTTTCTGTTGAGCCTCCTATCAATTCCTTGCCTGGTAGTGCAACTATAGAAAGTTTTAGTAAACCTATAGAACCTACGACTACCAAGGTTGTTCCCAGTGCCCCATCAGGCATTGTTTATCCTTCTGCACAAGGCTCTGAATCTACTCCATCCTGCCCATCTGAATCCATGCCAGTCAAAAGGCAAGGTCGTAAAACTCAAAATAGAGTGGATCCACCCCGGCGTAGGGGGAAAAAACCAACTTTGGTTTCACCTGTTTTTCCTGATGCCCTTGCTTGTCCGGATCCTAAATTAAGTGATCATTCACAGGATTCATCAGTGGATTCATTGGTGGGTAAAGCCACCACAAATGTTTCTCAAGCTCAAGCACTCCAGATCCTTTTGCCCAGTGGAGGAGGTGCTCGTGATTTAAAAAGAGAAGAGAGGGCTACCAATTCTGCCCAATATAAGCAGCAGAAAGGTGCATCAACAAGGATTGATAGTGCATCTGTATCCTCAGATAAGGTTACTGCTTTTGGCCGAATTCAAAATGTCAATGATGTGGCTCGTGTGATGAAAGAAGTTTTCTCTGGAACTTGCTCACCAAAACCTAAAGCACTTGATTCTGTTGGCAGTGAAGATAGGAACACACCTTTGGTACCCTTAAAATCTAATTCTGCACTTGATTCCTTAAATCGCCACTGTGATGATAAATCAGGTTCTGATATGCCAACTACTGAAGTAGCATGTCTAACTCCAGACCTTGTGGTCAACATACGTGAAAAGCAATCTTGTGAGGAAGCTACTAATCAAAATCTGAAAGACAAAGCAAGTTCAGTTATGCCAACTGCTAGAGCAATGGATGCCTCCAATAACCAGTGTTGGCAGGATAATGCAGGCTCCCATGTACCAACTACTGGAGCAGAATGTCTAACTTCAAACCTTATAGTCAACAGGCATGAAAAACAATCAGAGGAAGCATCCAATATTCAGAAGCTGGAGGGTAAAGCATGTTCAGATGTACCTATTATTGGAGCAGTGGATGCTTCCAACATCCAGTGTGAGGAACATAAAGCAGGTTCAGATACACCAACTTTGAGCCTTGCAGTGAACAGGCATGAAAAAAAACCAGAAGATATTCAGACTGTTGTGGGTGAACCAAGTTCGGATATGCCAACTACTGAAGCAGCAGATGCCTTGAATAATCAATATTTAGAGGATAAAGCAGGTTCTGATATACCTAATACTGGAGCAGTATGTCTAACTTCTGATCTTGCAGTGAGCAGGCATGTTAAACAATCAGAGGAAGCATCCAATGTCCAGAAGCTGGAAAGTAAAGCAAGTTTAGACATGCCAACTACTGGGGCAGAATGTATAACTTCAGACCTTGCATTGAACAGGCATGAAAAACAATCAGAGGAAGCATCCAATATTCAGGGTCCAGTGGGTGAAGCAAGTTCAGATGTACCAACTACTGGAGTAGGTGGTACCTCAAATGAACAGTGTTTGGAGGATAAAGCAAGTTCTGATATACCTACTATTGGAGCAGCATCTTTAACTACAGGTCTTGCAGTGTGGCATGAAAATCGATTAGTGGAAGATTCCAATATTCAGAATATGGAAGGTAAAACAAGTTTAGACATGCCAACTACTGGAGCAGTGAATGCATCCAATATTGACGCATCTGTGGGTGAACGTGTGGAGAGCTTGTCTGACAAGGATTCAGTTTTAAACTTGCCAGTGAAACTTGATGCTAAAGAATCTGAAGTTGGCATTACTAACCAGAATAATCAAGTTGTGCAAGAAAATGCATTGAGAGGCATGGAACAATCTCTTCCTTCAGCTGCAGAGGACAAAAATGCAGAATGCTCACCTGAGATGGATGTTACTAAGAGTTGTTTGCCTGTGCAAGAAACAGTATCAGTTGATGGGGGTCCACCTCCAAGCTCTTCAGCAGCTGTGTATGAACATGCGGAGAGATTGTCTGAGAAGGATTTAGTTTTCAAATCTCTAGCGAAACTTGATGCTAAAGAATCTGAAGCTGGTATTACTAACCAGGGTAATCCAGTTGTGCAAGACAATACATTGGAAGACTTGGATCAATCCCCTCCTTCAGCAGCAAAAGATAAAGTTACACTGAGCTCACCTGACAAGGATTTAACTGCTTGCTCAGAAACACCACAGGAATCAAAAAAATGTATTGTTGAGGATGGAAGGAGCATTATTCAAGACTCCGGAATTGTAAATGAAAAGGCACAAAGAGACTGA 6558 0.4164 MVTNIDSQGAMMMQEANLMAKQVSADGFKSVPVDDASRHGISFAMGQEGNESLSNNLPPPKYTMSERWIMDQQKKRLLVKQNWVQKLQKTKQRMVTSFHQLKENVNSSEDISTKTKSVIDLKKLQLLELQRRLRSDFLNEFFKPITTEMEHLKSIKKHRHGRRIKQLEKYEQKMKEERQKRIRERQKEFFSEIEVHKERLDDVFKIKRERWKGFNRYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRIVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKAVAGRFEHDVDEAESGSFLEKSENNLENEDETDQAKHYMESNEKYYMMAHSVKESIAEQPSCLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWDSEINFWAPGIHKIVYAGPPEERRRLFKERIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYVIIDEGHRIKNASCKLNADLKLYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESSGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGTTKARSVHNSVMELRNICNHPYLSHLHVEEVDNFIPKHYLPPIVRLCGKLEMLDRILPKLKDADHRVLFFSTMTRLLDVMEEYLTLKQHRYLRLDGHTSGNDRGALIERFNQPDSPYFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVQTVEEQVRAAAEHKLGVANQSITAGFFDNNTSAKDRREYLESLLRECKKEEAAPVLDDDALNDLLARSETELDVFEAIDKKRREDEMATWNKLVALDGSEQIPPLPSRLVTDEDLKQFYEVMKISDVPKGDVASNGVKRKSVYLGGLDTQQYGRGKRAREVRSYEEQWTEEEFDKMCQAESPESLKLKEVTETNCPTNASCSAVSASVTDPAAVPPVAPLLSSAGSFPVQQVKEITPPAKRGRGRPRRITSDKSPAALVPLAIAGTVEVDMQLQKGTLSGHLTSLTPESNTHSSEVTGVSRPVQQPDTGVAPNLNPAIPILTVTTNSQSDATSVSAPIQTRGQGQKTQSGGEATRCRGKKQVVVSPPVPGGPVGPDLKVNEQLKPNSMNLSTDQAVSQSETVSCITPVHHPTTISGSASLSCGKDNLIGVGTALNSLQSLPLSSITSLPQTVPTHPPVSIQNKGQNRKSQNGSGAPQRRGKKQATTSIPDVSAGRDLHLTPNLQIPSDSMTLDNATDLKSLQENYVQESKCVIQDQVSHSFGDQDLKSSEGSNDLAKKTVVLSSIQDNTTKSPGPEIEKVQVSDVHDSISDTLSKTTILQNSVNENFSVPTLPVAEVTKDQSLKAKTHQSAEASKVVLSVEPPINSLPGSATIESFSKPIEPTTTKVVPSAPSGIVYPSAQGSESTPSCPSESMPVKRQGRKTQNRVDPPRRRGKKPTLVSPVFPDALACPDPKLSDHSQDSSVDSLVGKATTNVSQAQALQILLPSGGGARDLKREERATNSAQYKQQKGASTRIDSASVSSDKVTAFGRIQNVNDVARVMKEVFSGTCSPKPKALDSVGSEDRNTPLVPLKSNSALDSLNRHCDDKSGSDMPTTEVACLTPDLVVNIREKQSCEEATNQNLKDKASSVMPTARAMDASNNQCWQDNAGSHVPTTGAECLTSNLIVNRHEKQSEEASNIQKLEGKACSDVPIIGAVDASNIQCEEHKAGSDTPTLSLAVNRHEKKPEDIQTVVGEPSSDMPTTEAADALNNQYLEDKAGSDIPNTGAVCLTSDLAVSRHVKQSEEASNVQKLESKASLDMPTTGAECITSDLALNRHEKQSEEASNIQGPVGEASSDVPTTGVGGTSNEQCLEDKASSDIPTIGAASLTTGLAVWHENRLVEDSNIQNMEGKTSLDMPTTGAVNASNIDASVGERVESLSDKDSVLNLPVKLDAKESEVGITNQNNQVVQENALRGMEQSLPSAAEDKNAECSPEMDVTKSCLPVQETVSVDGGPPPSSSAAVYEHAERLSEKDLVFKSLAKLDAKESEAGITNQGNPVVQDNTLEDLDQSPPSAAKDKVTLSSPDKDLTACSETPQESKKCIVEDGRSIIQDSGIVNEKAQRD. 2186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04576 2185 Pfam Helicase conserved C-terminal domain 674 787 IPR001650 -
Seca6g04576 2185 PANTHER SNF2/RAD54 HELICASE FAMILY 62 1126 - -
Seca6g04576 2185 Coils Coil 167 187 - -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1134 1159 - -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1134 1154 - -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1248 1310 - -
Seca6g04576 2185 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 366 533 IPR014001 -
Seca6g04576 2185 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 677 823 IPR001650 -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1584 1598 - -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1248 1290 - -
Seca6g04576 2185 Pfam SNF2-related domain 358 648 IPR000330 GO:0005524|GO:0140658
Seca6g04576 2185 Gene3D - 595 817 IPR027417 -
Seca6g04576 2185 SMART ultradead3 350 544 IPR014001 -
Seca6g04576 2185 Coils Coil 2179 2185 - -
Seca6g04576 2185 SMART helicmild6 703 787 IPR001650 -
Seca6g04576 2185 SMART SnAC_2 880 974 IPR029295 GO:0042393
Seca6g04576 2185 Pfam Snf2-ATP coupling, chromatin remodelling complex 881 973 IPR029295 GO:0042393
Seca6g04576 2185 MobiDBLite consensus disorder prediction 2107 2167 - -
Seca6g04576 2185 CDD DEXHc_SMARCA2_SMARCA4 351 587 - -
Seca6g04576 2185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 585 IPR027417 -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1462 1498 - -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1462 1547 - -
Seca6g04576 2185 Coils Coil 268 288 - -
Seca6g04576 2185 FunFam Chromatin structure-remodeling complex protein SYD 595 817 - -
Seca6g04576 2185 CDD SF2_C_SNF 665 797 - -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1899 1931 - -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1081 1100 - -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1905 1931 - -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1499 1515 - -
Seca6g04576 2185 Gene3D - 345 594 IPR038718 -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1569 1598 - -
Seca6g04576 2185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 846 IPR027417 -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 1632 1654 - -
Seca6g04576 2185 MobiDBLite consensus disorder prediction 2111 2131 - -
Seca6g04576 2185 FunFam Chromatin structure-remodeling complex protein SYD 345 594 - -
Seca6g04576 2185 ProSiteProfiles HSA domain profile. 172 246 IPR014012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04576 Seca-Chr6 113352292 113370535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04576 674 823 RAD5 or RAD16-like Gene Family AT5G22750 35.333 8.08e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g04576 SNF2_N 5.3e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04576 - - ahf:112795784 2613.56