Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04575 ATGGAATGCAATAAAGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAAATGGAAAACAAGGATTTCACAGGGGCTCGCAAATTTGCACTTAGGGCTCAGCAACTATATCCTGATCTGGAGAATATTGCTCAAATGCTTGTTGTTTGTGATGTGCATTGTTCTGCTGAGCAGAGATTGTATGGTAATGTGATGGACTGGTATAAAATTCTTCAAATTGAGGTGATGGATAATGATGCAACAATTAAGAAGCAATACAGGAAGTTTGCTCTCCAACTTCATCCTGACAAAAACAAGTTTGCTGGTGCAGAAGCTGCATTTAAGCTGATAGGGGAAGCTCAAAGGGTGCTTTTGGATAGAGAAAAAAGATCTTCGTTTGACATGAACTTGCGCAGGTTTCCAATGAACAAAACTGCTAATGCTATGCCATCTCATCATCAGCAGAAGCAGAAGGTTCAGACGAATTTTAATCCTGTGATGCAAACCAATATCAGGCCCAATTTCACAAACTTGAATCCTCAGCAGCAACAACAGTCTAGGCAGCCATCTCAGCAAGGGATTAATGGTGACCGCCCTACTTTTTGGACTGTTTGCTCATTTTGTTCCATGAGATATGAGTATTACAGGGAGGTTTTAAATAGATCTCTTCGCTGTCAAAATTGCAATAAGCCCTTCATTGCATATGAGGTGGATAGGCAAAGTACAACACCGGCAACTAATTCAAGTCAACAAGCTTTTGGCCAGCAGAACTATGGTCTGAATCATGGTGCTTTTAAGGTTGGTGTTGGATCTCAAGGTAATTTGCATACTCACAGGTCCAATAAGGAATCTTATCAGAAAAAAGGCCCTACTTCTAATGTCTCTGTAAAGACAAATGGAAAGACAGGGAGGAAGCGGGTGGCGGAATCTAGTGAAAGTTCTGAATCTATAGGCAGCACTGATTCTGAAGATGATGTGATTTCTGACATTGATGGAATTCCTGATGTTTCTGCTCATAGAAAAGAGCATCCACGTAGATCTACGCGGCAAAAACATCAGGTTTCCTACAAGGAGAATGTGAGTGACGACGATGATGAGTTATTACATCCTTTAAAACAGAGTAAGAGGAGTGGATCACCATGTATCAATGGTGAAAATCGTGGGGAGGCAGCTAAAATGAATGATCAGAATGGTTTGGCTGCTGATCTGAAAGACGCAAATCGGAAGCATAATTTTAATTCTGAAGAGAGCTTAGAAAATATGAATGTGGAAATTAAGGAGGTGAGGGGAAAAGATGCAGTGGGTAACTCAAAGATAGATGAAGCTTTGGAGCATTCACCCTCGAAATCAACAGATCAACCAGATGTTTTTGTTTGTCCTGATGCAGAGTTCACTGACTTCGACAAGGACAAGAAAGAAGAGTCTTTTGCTGTTGGGCAGATTTGGGCTATTTATGATACAACAGATGGCATGCCTAGATTCTATGCTATAATCAGAAAAGTTCTCTCTCCTGGATTCAAGTTGCGGATAACATGGTTTGAGCCAGATCCAGATGACAATGATGGAATCAACTGGTTCAATGAGGAACTGCCAATTTCTTGTGGGAAATATAAACTTGGTAACACTGAAACCACTGAGGATCGTCCGATGTTTTCTCATCAGATTTTTTGTGAAAATATTGGCCGCTCTACTTTTAAAGTGTATCCTAGAAAAGGAGAAACTTGGGCTCTTTTTAAAAATTGGGATATCAAATGGTATATGGATGTGGAATCTCATCGGCAGTATGATTTTGAGTTTGTTGAGATTTTGTCAGATTATGTTGAAGGTGTGGGAGTAGTTGTTGCATACTTGGCTAAGTTGAAAGGTTTTGTGAGTCTTTTCTCTCAAATTGTGAAAGGAGGTAATCGCACATTTCAAATTCCATCAGTTGAGTTATTGAGATTCTCTCACAGGGTTCCATCTTTTAAAATGACTGGTCAGGAAAGAGCAGGTGTGCCAGTAGGATCTTATGAACTTGATCCTGCATCCTTACCGATGAATCTGGAAGAGGCTGCCATTCCTGAAGATTTGGAAGTGAAGGTTAGCCATAGTCCATCTGTTGGGATGAGCTCAAGGTCTTCAGATATTTTGAAATCCACAATGAAATTGGAGGAAGATGCATCCACTGCCAGGGTTAATTTGGAAAGAAGCAAATCAACAAAGGAGAACAAGGATCCTATTGATATTGATGATGTTAGTGCTCCATCGGCTTCAGTTGCAGAAGCTTTTGAAATTCCAGATCCTATGTTCTTCAATTTTGATGCTGAGAGGTCCATTGAAAAGTTTCAGATTGGTCAGATTTGGGCATTTTACGGTGATGAGGATGGACTGCCAAAATACTATGGTCAGATTAAGAAGGTTAGGACTAGCCCAGATCTTGAGTTGCAAGTTACTTATCTGACTAACTGCTGGCTACCGGAAAATGTTATTAGATGGCAAGATAAGGACATGCTCATTTCCTGTGGAAGGTTTAAAATCAGAGCAGGCTCTCGTCCCTGTGTTTATAGTAACACATATTCCACATCACATCAGGTGCACACTAGTACTGGCGGTAAGAATAAGGAATACGAAATTTTCCCAAGGAAAGGTGAAATTTGGGCATTGTATAGGAAATGGAATACCAAAATCAAGCGATCTGATTTGGAAAGCTGGGAGTATGACATAGTGGAAGTTGTTGAAGAAAATGATTTGTCGATGGAGGTCTTGCTTTTGGAGATGGTAACTGGTTATAATTCAATTTTTAAAGGCAAATCAAATGAACGAGGATCAGCTGTGACATTGACAATCTCTAAGACAGAGTTGCTCAGGTTCTCTCACCTAGTCCCTGCTTTCAAACTGACAGAAGAACATGGCAATCTGAGAGGCTTCTGGGAGCTTGATCCAGGAGCAATACCTCTTCATTATTTAGTTACAAATGAAAAAAAGGGGGGTTGA 2955 0.4044 MECNKEEALRAKDIAEKKMENKDFTGARKFALRAQQLYPDLENIAQMLVVCDVHCSAEQRLYGNVMDWYKILQIEVMDNDATIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRSSFDMNLRRFPMNKTANAMPSHHQQKQKVQTNFNPVMQTNIRPNFTNLNPQQQQQSRQPSQQGINGDRPTFWTVCSFCSMRYEYYREVLNRSLRCQNCNKPFIAYEVDRQSTTPATNSSQQAFGQQNYGLNHGAFKVGVGSQGNLHTHRSNKESYQKKGPTSNVSVKTNGKTGRKRVAESSESSESIGSTDSEDDVISDIDGIPDVSAHRKEHPRRSTRQKHQVSYKENVSDDDDELLHPLKQSKRSGSPCINGENRGEAAKMNDQNGLAADLKDANRKHNFNSEESLENMNVEIKEVRGKDAVGNSKIDEALEHSPSKSTDQPDVFVCPDAEFTDFDKDKKEESFAVGQIWAIYDTTDGMPRFYAIIRKVLSPGFKLRITWFEPDPDDNDGINWFNEELPISCGKYKLGNTETTEDRPMFSHQIFCENIGRSTFKVYPRKGETWALFKNWDIKWYMDVESHRQYDFEFVEILSDYVEGVGVVVAYLAKLKGFVSLFSQIVKGGNRTFQIPSVELLRFSHRVPSFKMTGQERAGVPVGSYELDPASLPMNLEEAAIPEDLEVKVSHSPSVGMSSRSSDILKSTMKLEEDASTARVNLERSKSTKENKDPIDIDDVSAPSASVAEAFEIPDPMFFNFDAERSIEKFQIGQIWAFYGDEDGLPKYYGQIKKVRTSPDLELQVTYLTNCWLPENVIRWQDKDMLISCGRFKIRAGSRPCVYSNTYSTSHQVHTSTGGKNKEYEIFPRKGEIWALYRKWNTKIKRSDLESWEYDIVEVVEENDLSMEVLLLEMVTGYNSIFKGKSNERGSAVTLTISKTELLRFSHLVPAFKLTEEHGNLRGFWELDPGAIPLHYLVTNEKKGG. 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04575 984 MobiDBLite consensus disorder prediction 263 388 - -
Seca6g04575 984 Pfam Domain of unknown function (DUF3444) 449 655 IPR024593 -
Seca6g04575 984 Pfam Domain of unknown function (DUF3444) 749 956 IPR024593 -
Seca6g04575 984 Pfam DnaJ domain 67 128 IPR001623 -
Seca6g04575 984 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 681 - -
Seca6g04575 984 PRINTS DnaJ domain signature 87 102 IPR001623 -
Seca6g04575 984 PRINTS DnaJ domain signature 103 123 IPR001623 -
Seca6g04575 984 PRINTS DnaJ domain signature 69 87 IPR001623 -
Seca6g04575 984 Gene3D DnaJ domain 65 182 IPR036869 -
Seca6g04575 984 MobiDBLite consensus disorder prediction 343 366 - -
Seca6g04575 984 SUPERFAMILY Chaperone J-domain 61 131 IPR036869 -
Seca6g04575 984 CDD DnaJ 67 120 IPR001623 -
Seca6g04575 984 SMART dnaj_3 66 123 IPR001623 -
Seca6g04575 984 MobiDBLite consensus disorder prediction 715 736 - -
Seca6g04575 984 MobiDBLite consensus disorder prediction 280 294 - -
Seca6g04575 984 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Seca6g04575 984 MobiDBLite consensus disorder prediction 715 738 - -
Seca6g04575 984 MobiDBLite consensus disorder prediction 163 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04575 Seca-Chr6 113341855 113347929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04575 4 231 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.897 1.35e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04575 - - gmx:100779228 1461.05