Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04572 ATGGCTTCCATATCTGAAATTGCATGGACAAGATGTACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCCCCTTCAGTTTCTACACCTGTTTCTGCAAGGACATATAATGAACAGATTAAGCCACAAAAAGATGCTGTTCGTTCTAAGGTTTCAAGGTCCCTTTCCGTACCTGGACGAAGTGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGTGAACAGGAACAACAAGATGCAAATGATGATCAAATAACTCCTGTGCCAGTAGAAGGTGCAGATGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTCTTGATGTGTGCGATGAAAGAAACACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAAGGAAACAAGAAATGTGATGTGTGTGGGCAAGAAGTTCAGAATTTACCTGTTACTTTGCTTCGTGTGTCCAGCTCTGTTCAACGACAAAACAGACAGGTGCAGGGTCAGCAGAACCTACATCCAGAGTCAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCCATCATTATAGCAGCACCATTTGCCTTTACCTTGGGCCTCCTGGCATCTATTTTTGCAGTCATCCTTGCAATTAAAGAGTATATATGGACATATGCTGCACTTGAGTTTGCACTTGTGGCTATAACTGTGCATCTGTTTTATACTATGTTGCATTTGACAGCCATTTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAGCTGCTATGGGTATCAACTATTTATATATCCAGTATGTCACTTGGAGACTTCAGGTCTCTCATAATGATAACCCAGTATGA 945 0.4074 MASISEIAWTRCTSLPVTPASNLSPSVSTPVSARTYNEQIKPQKDAVRSKVSRSLSVPGRSVVIVRSVSFSTRSEQEQQDANDDQITPVPVEGADDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNKKCDVCGQEVQNLPVTLLRVSSSVQRQNRQVQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHLFYTMLHLTAIYAILLSSVLGFGAAMGINYLYIQYVTWRLQVSHNDNPV. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04572 314 MobiDBLite consensus disorder prediction 19 39 - -
Seca6g04572 314 CDD RING_CH-C4HC3_MARCH 106 153 - -
Seca6g04572 314 SUPERFAMILY RING/U-box 102 156 - -
Seca6g04572 314 ProSiteProfiles Zinc finger RING-CH-type profile. 98 159 IPR011016 GO:0008270
Seca6g04572 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 161 IPR013083 -
Seca6g04572 314 SMART ringv_2 105 153 IPR011016 GO:0008270
Seca6g04572 314 Pfam RING-variant domain 106 152 IPR011016 GO:0008270
Seca6g04572 314 MobiDBLite consensus disorder prediction 19 43 - -
Seca6g04572 314 PANTHER OS02G0165000 PROTEIN 4 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04572 Seca-Chr6 113320945 113325867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04572 119 214 C3H Transcription Factor Family AT5G59000 29.167 3.11e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04572 - - gmx:100527094 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04572 6 113320945 113325867 Seca6g04572 6 113320945 113325867 ECH