Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04571 ATGAAGAATGGTGAGCGAAACTGGAACTCGATGCAAAAGAATTCGGGGTTGGGAAGGTGTGGAAAAAGTTGCAGGTTGAGATGGGTAAACCATTTAAGGTCTAACTTGAGTAAAAGTCCATTTTCAAATGAGGAAGAGAAAATCATCATCGTTCTTCATGCTAAACAAGGAAACAAATGGGCTCAAATGGCCGCACAATTACTTGGGAGGATAGCCAATGAAATAAAAAACTTCTGGAATACCAAAATGAAAAGGGCTGGATCCACCACCCCTGCTTCATCCAACACTAGTGGTGTTTATGGCTTGATGGGAGCTTCAAGCATGGCTAATGGCTATTATGAAGTTGCATCATTATCATATAGAAATAGTGGTCTTTTGGATGCTCTTGTGACGGAGGATCAAAGCCTTTATCGCAATGATGACAAGTCAAAGAGTGAGTGTGAGGATTCAACTAAAGTAGGAGGAGAGTTATCTTGTAAGAGGAAAAGTATGACAGTTGAGGAATATGGTGAAGAGGATGAACAAGTGTTTGTGGAGACAACTATGGAGAACAATGACAACAATACTAACAAGAGACAGACGATTGATAAAGGGAAGAAACCAAATGTTGAGGAGGATTCATTGGAGGGGATGGATTTTGTGGATGATGACTTATTTAGTCTGCTCAACAACTTTCCCTTATAA 684 0.4006 MKNGERNWNSMQKNSGLGRCGKSCRLRWVNHLRSNLSKSPFSNEEEKIIIVLHAKQGNKWAQMAAQLLGRIANEIKNFWNTKMKRAGSTTPASSNTSGVYGLMGASSMANGYYEVASLSYRNSGLLDALVTEDQSLYRNDDKSKSECEDSTKVGGELSCKRKSMTVEEYGEEDEQVFVETTMENNDNNTNKRQTIDKGKKPNVEEDSLEGMDFVDDDLFSLLNNFPL. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04571 227 MobiDBLite consensus disorder prediction 190 204 - -
Seca6g04571 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 32 IPR017930 -
Seca6g04571 227 ProSiteProfiles Myb-like domain profile. 33 83 IPR001005 -
Seca6g04571 227 MobiDBLite consensus disorder prediction 182 204 - -
Seca6g04571 227 Gene3D - 39 86 - -
Seca6g04571 227 CDD SANT 40 81 IPR001005 -
Seca6g04571 227 ProSiteProfiles Myb-like domain profile. 1 32 IPR001005 -
Seca6g04571 227 SMART sant 37 85 IPR001005 -
Seca6g04571 227 SMART sant 1 34 IPR001005 -
Seca6g04571 227 CDD SANT 2 32 IPR001005 -
Seca6g04571 227 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 2 85 - -
Seca6g04571 227 Pfam Myb-like DNA-binding domain 38 81 IPR001005 -
Seca6g04571 227 SUPERFAMILY Homeodomain-like 18 86 IPR009057 -
Seca6g04571 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 87 IPR017930 -
Seca6g04571 227 Gene3D - 1 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04571 Seca-Chr6 113316631 113317798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04571 2 85 MYB Transcription Factor Family AT2G32460 73.810 6.87e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g04571 Myb_DNA-binding 1.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04571 K09422 - cit:112497285 139.813