Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04561 ATGAACGATGAACGAGAACCACAACCTTCATCGAGAGAAGATTATATTGGCAGCAATGGCGTCCACAAGTTAGAAAGAAAACAGATGATAAAAGATTGTCCTTCTAGAGCCAGACGACCACGACCTGGATTTTCTGATTCATTTTCAAGTATTGACTTGGCAGCTTTAGAGATTGAGGAGGGAGGCCTACATGAGGAATCTCCTAGAAGTCAAGAGTCTGAAACGCCAAGTTCCAAGGCAAGTACTTCTGATTCTGAGGGTCAGGCAGCTTTAAGAGACAATAACAATAACCAGTGGCGTGGTTTCTTTAAATTACTCAAGAAAGGATCCCAAATGCCCTTCCAAACTTTTCATCCACTTAAAAATGTTCCTAAGCTAACTAGAAGAAAAAGTAAAAGAATCAGGGAGGATCTCATTCCATCTCTCAATTCTCCTGCTCTTCAGTCATCTTTTGACTCGGAGTTTTGCTACTTCAAATCTTCCTGGAAAAATTTCACTCTCTTAGAGATCAAGGCTGCAACCAATGACTTTAGCCATGATAATTTAATTGGAGAGGGAGGCTATGCTGAAGTTTACTTAGGCAAATTGGAAGATGGAAATTTTGTTGCCATTAAGCGGCTTACAAGGGGGTGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCACGTGGACCATCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATGTTTCTTGTTCTTCAGTTGTCTCCACATGGAAGCCTGTCATCCATACTTTATGGACCTAGGGAGAAACTGAATTGGAACCTCAGATATAAGATTGCTTTGGGGACTGCTGAGGGCCTTCGCTATCTGCATGAGGGATGTCAAAGAAGGATTATTCACAAAGATATCAAAGCTTCTAATATACTACTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTCGGGCTTGCCAAGTGGTTACCTGACCAATGGACTCACCATACTGTCTCCAAAGTAGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACTGATGTCTATGCTTATGGGGTGCTATTATTGGAGCTCATTACTGGGAGACAAGCTTTGGATAGCTCACAGAAAAGTCTGGTGATGTGGGCAAAACCTTTGTTATCTAGTAATAACACCAAAGAGCTTGTTGATCCGATTTTGGCTGGTGCTTATGATGAAGAGCAGATGAAACTTGTAATCTTAACAGCTTCTCTGTGTATAGATCAGTCTTCAATGCAGCGACCACATATGAGCCAGGTGTTACAAATACTAAAAGGTGAAGAAGAAAGCTTGAAAACGATGAAAGAAAGGCAGAAGTCAAAACTTCAGCGTACATACTCTGAAGAACTCTTAGATGCAGAAGAGTACAACTCAACCAAGTTGTTGAATGAGAGGGATCGACACATGGAGACTATTTTAGGCTCCAGTAACTCAATTAAAGAAGAAAGCAATACAAACTAG 1515 0.4099 MNDEREPQPSSREDYIGSNGVHKLERKQMIKDCPSRARRPRPGFSDSFSSIDLAALEIEEGGLHEESPRSQESETPSSKASTSDSEGQAALRDNNNNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDSEFCYFKSSWKNFTLLEIKAATNDFSHDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGCQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWNLRYKIALGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSSNNTKELVDPILAGAYDEEQMKLVILTASLCIDQSSMQRPHMSQVLQILKGEEESLKTMKERQKSKLQRTYSEELLDAEEYNSTKLLNERDRHMETILGSSNSIKEESNTN. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04561 504 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 254 456 - -
Seca6g04561 504 MobiDBLite consensus disorder prediction 1 93 - -
Seca6g04561 504 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 147 251 - -
Seca6g04561 504 MobiDBLite consensus disorder prediction 18 39 - -
Seca6g04561 504 SUPERFAMILY Protein kinase-like (PK-like) 157 442 IPR011009 -
Seca6g04561 504 ProSiteProfiles Protein kinase domain profile. 177 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04561 504 Gene3D Phosphorylase Kinase; domain 1 141 251 - -
Seca6g04561 504 ProSitePatterns Protein kinases ATP-binding region signature. 183 205 IPR017441 GO:0005524
Seca6g04561 504 Pfam Protein tyrosine and serine/threonine kinase 180 441 IPR001245 GO:0004672|GO:0006468
Seca6g04561 504 Gene3D Transferase(Phosphotransferase) domain 1 254 470 - -
Seca6g04561 504 MobiDBLite consensus disorder prediction 58 72 - -
Seca6g04561 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Seca6g04561 504 PANTHER OS08G0249100 PROTEIN 64 476 IPR046958 -
Seca6g04561 504 MobiDBLite consensus disorder prediction 73 93 - -
Seca6g04561 504 SMART serkin_6 177 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04561 Seca-Chr6 113202602 113206840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04561 148 446 Receptor kinase-like Gene Family AT1G53420 40.391 1.09e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca6g04561 PK_Tyr_Ser-Thr 5.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04561 - - lja:Lj6g3v1915960.1 872.078