Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04548 ATGGGTTGTGTTCATGGCAAGTGCTGTAGCCGCTACCCTCCACCTTCAGTGGGTGGCTCCAGGGACTACCGAGAACCTGGTCCTTTCTGTGGACAAAGGAAACACATGCTCACTCAGAGATCACTGCACTCTGTTCCTGTCCCTTCTCACAACTTCACTTTGGAATACTCTGTTCTCACTCAGCGGGGATACTACCCTGACTCACCTGATAAGGAAAACCAAGATAGTTTCTGCATTAGGACACAATTTCAAGGTAACCCAAGTGTCCATTTCTTTGGTGTCTATGATGGGCATGGTGAATTTGGTGGCCAGTGTTCGAACTTTGTTAAGGATAGGTTGGTAGAAAATTTGTCAAATGACCCTACCTTGTTGGAGGATCCTGTAAAGGCCTACACTTCAGCATTCTTGGCAACAAATGATGACTTGCATAAGAATGAGATTGATGATTCCATGAGTGGCACTACCGCAATTACAGTGCTTGTTATTGGGGACACACTTTATGTTGCTAATGTTGGTGATTCTAGAGCAGTGCTGGCTGTTAAGGATGGGAATCGAATTGTGGCTGAGGACTTGTCATCTGATCAGACACCATTTAGGAGAGATGAATATGAAAGAGTGAAACTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAGGTGGAAGGGCATAAGGATCCGGATATCCAGAATTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCGAGATTGTGGGTTCAGGATGGGATGGTTCCGGGAGCTGCTTTTACAAGGAGTGTAGGGGATAGTGTGGCAGAGACTATTGGTGTCATTGCTGTTCCGGAGGTGTCAACAGTTCAGCTTACGCCTAATCATCTTTTTTTTGTTGTTGCAAGTGATGGTGTATTTGAGTTCCTATCAAGCCAAACTGTTGTTGATATGGCTGCAAGTTATTCAGATCCCCGTGATGCATGTGCTTCCATTGCTGGAGAGTCTTATAAACTATGGTTGGAACATGAGGGCCGGACAGATGATATAACGATTATCATTGTTCAGATCAAAGGCCTGTCTAATTTAGGTACACCTGGATTCGGATCAGGCGAGATCAGTGTCAGTACTGTAACGAGGGCCAAGAAGGGAAAGGGAACTTCTGAGATATCTACTACCACTGGGTTAGATGTTTATCATCCTGTGAGGAATGGTTTCTCTGATTTACAATCCTGTCAGCATGTGGTCTCAACGAGAAGCCCAGCCTTAGTAGTTCCCTCTCCAGCATGTCAAAGACCAATTGAATTGGTAGATGATTGGAGAGAGGCTTCATGGAAGCTTTTACCAATTCTCCTTGTAAATTCTCCTAGGCTGCTGAAGGTTGCTGGTTTGAGGTGGCATTATCTTGGCAGCTGA 1380 0.4543 MGCVHGKCCSRYPPPSVGGSRDYREPGPFCGQRKHMLTQRSLHSVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFCIRTQFQGNPSVHFFGVYDGHGEFGGQCSNFVKDRLVENLSNDPTLLEDPVKAYTSAFLATNDDLHKNEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQNWGDEESQGDDPPRLWVQDGMVPGAAFTRSVGDSVAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACASIAGESYKLWLEHEGRTDDITIIIVQIKGLSNLGTPGFGSGEISVSTVTRAKKGKGTSEISTTTGLDVYHPVRNGFSDLQSCQHVVSTRSPALVVPSPACQRPIELVDDWREASWKLLPILLVNSPRLLKVAGLRWHYLGS. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04548 459 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Seca6g04548 459 SMART PP2C_4 51 343 IPR001932 -
Seca6g04548 459 CDD PP2Cc 71 345 IPR001932 -
Seca6g04548 459 MobiDBLite consensus disorder prediction 222 241 - -
Seca6g04548 459 Pfam Protein phosphatase 2C 73 318 IPR001932 -
Seca6g04548 459 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Seca6g04548 459 PANTHER PROTEIN PHOSPHATASE 55 344 IPR015655 GO:0004722|GO:0006470
Seca6g04548 459 MobiDBLite consensus disorder prediction 222 240 - -
Seca6g04548 459 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Seca6g04548 459 Gene3D - 42 347 IPR036457 -
Seca6g04548 459 SUPERFAMILY PP2C-like 42 347 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04548 Seca-Chr6 113089326 113093671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04548 1 350 PP2C-type Phosphatase Gene Family AT3G06270 73.714 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04548 - - aprc:113872580 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04548 6 113089326 113093671 Seca6g04548 6 113089326 113093671 ECH
Seca12g00255 12 2361300 2364461 Seca6g04548 6 113089326 113093671 PCT