Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04535 ATGGCCAAACTATGGGCTTGCCTCTTTTTTGTCTCACTCTCACTGTGTTACTTCTTGGCTTGCTCAGCTATGAGTAGAAAAAATATCACTACTGATAAATTTGCACTTCTTGCATTCAAATCCTCCGTTACTTTAGACCCTTATCATATGCTTAATAATTGGTCAACCTCCTCTTTTTCTTTGTGCAATTGGGTCGGTGTCACTTGTGATGCGGTCCATGAAAGAGTGAGGGCTTTGGATCTTAGTAACATGGGCCTTGGAGGAACCATTACCCCACAACTAGGGAATCTATCCTTTGTAGTTGAGCTTGACCTCCAAGGTAATAACTTTTATGGTCGGTTGCCAAACGAGTTATTTGGGTTGCATAGACTGAGGTTGCTTGACTTAAGCAACAATGGGTTTGTTGGAGGAATCCCAACAAGGGTAGGGGACTTACCAAAACTTCAACATTTAGATCTTAGCCATAATAATCTTACTGGCTTTATCCCCCATTCTATATTCAACTTGTCCAAGTTAGAATACTTGGATTGCTCATTAAATTTCCTCAAGGGAATCATTCCACCTTCCATTGGTCAACTTCGTCAATTGAAGATTTTGGATATTAGAAATAACACGTTGTCGGGAACCATACCACCAACAATTTCCAACCTGTCTTCACTTGAAGCGTTCCATTTATCTCATAACTCCTTATCAGGAGAATTTCCAAAAGGAATTGGTGATCTCACACAACTCAGAATGATGAACCTTCAATATAATCAGCTTTCGGGCAACATATCATCCATAATTTTCAACAACTCATTGTTGCAATATCTGGCTCTTGGTCAGAATAATCTGTTCGGCAATATTCCATCAAATATTTGTCAAGGCCTTCCAAACCTTAGATTACTTTATCTTTATGCTAATGATATTTCCGGTGAAATGCCGACTCTTTGGCATCAATGTAAAGAGTTGGTAGATTTGGAACTATCCTTCAATAATTTCAACAAAGGACGTATTCCAGGTGACATTGGAAACTTGACCAAGCTTCAATATCTATATCTTCGTAGCAACAACTTGGAGGGTGAAATTCCATTCTCCCTTTTCAACATCTCTTCTTTGAGACAGGTCAACCTTGACAAAAATTACAATTTAAATGGAAGTCTTCCACATAAGATGTGTGATCAACTTCCTCAACTTGAAATGTTTACTTTACAAGTTAATCAATTGGAAGGAAGCATTCCGCGATCAATTGGCAATTGCACATCGCTGAAAATATTAAGTTTTGAGGACAACTATTTTACAGGTTCAATACCCATGGAAATTGGCAACCTTGATCAACTTGAGGTTCTACAATTGGGAAATAACAGCTTGAGTGGACCAATTCCTTCAAAACTTTTCAACATCTCAACATTGACATACTTGCGTCTTGCAAATAATTCTCTCACTGGCATTCTTCCATCAGATATGGGGTATGGCCTTCCTAACTTGGAACAACTACACATGTATTCAAACAAACTTATTGGAAACATTCCAAATACTATATCCAATTCTTCTAAGCTCACTATAGTTGACTTGGGTGAGAATAGATTCAGCGGAATCATACCCAATTCCTTTGGAGATTTAACACTCCTTGAATCACTCCTTATAGCTGGCAATAATTTGACAACATATGATTCTCCTGAACTCAACTTTCTTACTTCATTGACAAGTTGTAGACACTTGACATATTTGGAAGTAACAGGAAATAGTTTACTATCAAAACTTCCCAAATCAATTGGAAACTTATCAAAGTCTCTAGAACAGTTTGTGGCAAATTCTTGTAGAATTGATGGTGATATTCCACTGGAAATTGGAAACATGAGCAACCTGATACGTTTATCTTTGAATAGGAATAATATGAATGGACCAATGCCTGCTACAATCAAAGGGTTAAAAAAACTTCAATATTTTGGTCTTGCTTACAATGGACTACAGGGATCCATCATTGATGAGCTTTGTCAAATTAGGAGTTTAAGTCAGTTGTATCTGACAAAAAATAACCTTTCTGGAGTGTTACCAACATGCTTGGGAAATATGACTTCTCTTAGAAAAATATACATGGGATCCAACAAATTGATATCTCAAATACCTTCCTCTTTTTGGAGTTTGAAAGATATCTTAGAGGTAAACTTCTCCTCTAATGCTTTAACTGGAAATCTTCCACTTGAGATTGGGCAGTTGAGAGCTCTTGTACTATTGGATCTGTCAGGAAATGAGATTTCAAGCAACATTCCTACAACCATCAGTTTCTTGAAAACTTTGCAGTTTCTTTCCTTAGCACAGAACAAATTACAAGGGTCTATTCCCCCATCACTTAGTGAAATGGTAAGCTTGAGCTTCTTGGACTTATCCCAAAATCTTTTGTCTGGTGTGATTCCAAAATCCTTAGAGTCACTTGTCTATCTTAAATACATCAACTTTTCATACAATAGATTACAAGGAGAGATTCCTGATGATGGACCTTTCAAAAATTTGACAGCTCAATCTTTCATGCATAATGAGGCACTTTGTGGCAATCCTCGCTTACAAGTACCTCTATGTGGTAAACAGGACAAGAGAAAGTCAGTGACAAAAACCCTTTTAATCAAATGCATGCTACCCATAATTGTGTCAATCATTTTGGTTGTTACATGCATAATACTTCTACAACATAAAAGGAAAAAGGTTGAAAATTCAGCTGAAATGGATTTATCAGGTTTAGGAGCACTGAGAAGGATTTCCTATTATGAACTCATACAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAAGGGAAGCTTTGGTTGTGTGTATCAAGGGATGCTTTCTAATGGGAAGATGGTTGCAATTAAAGTAATTGATTTGGCTTTGGAAGCAACATCAAAGAGCTTTGATGCAGAGTGCAATGCAATGCGCAATCTACGACACAGAAATCTTGTCAAGATTATTAGTAGTTGTTCAAATGTTGATTTCAAATCTTTGGTAATGGAGTTCATGTCTAATGGAAGCCTAGACAAATGGTTATACTCAGATCACTACTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGATGTGGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCGGTGGTTCATTGTGATTTGAAGCCTAGTAATGTTTTATTGGATGAAAACATGATTGGACATGTTAGTGATTTTGGCATTGCCAAACTATTGGATGAAGGACAGTCTAAAACTCATACTGAAACCTTGGCTACTCTTGGCTACATTGCACCAGAGTATGGATCAAAGGGAATTGTTTCTATCAAAGGAGATGTATACAGCTATGGGATTATGCTAATGGAAGTCTTCACTGGAAAGAAGCCAATAGATGGTATGTTTGCAGCAAAGTTAAGCTTGAGAAATTGGATCAATGAGTCAATACCCAATTCAATTATGGGAGTTGTGGATTCCAATTTAGTCCAACAACATGGGGAGCAAATTGCATCTATTTTGAGTTTGGCCTTAAGTTGTTGTGCAGATTCACCTGAAGCACGATTAAATATGACACATGTCACTGCATCATTAACCAAAATCAAAACCTTGTACACCCAATATTAA 3600 0.3703 MAKLWACLFFVSLSLCYFLACSAMSRKNITTDKFALLAFKSSVTLDPYHMLNNWSTSSFSLCNWVGVTCDAVHERVRALDLSNMGLGGTITPQLGNLSFVVELDLQGNNFYGRLPNELFGLHRLRLLDLSNNGFVGGIPTRVGDLPKLQHLDLSHNNLTGFIPHSIFNLSKLEYLDCSLNFLKGIIPPSIGQLRQLKILDIRNNTLSGTIPPTISNLSSLEAFHLSHNSLSGEFPKGIGDLTQLRMMNLQYNQLSGNISSIIFNNSLLQYLALGQNNLFGNIPSNICQGLPNLRLLYLYANDISGEMPTLWHQCKELVDLELSFNNFNKGRIPGDIGNLTKLQYLYLRSNNLEGEIPFSLFNISSLRQVNLDKNYNLNGSLPHKMCDQLPQLEMFTLQVNQLEGSIPRSIGNCTSLKILSFEDNYFTGSIPMEIGNLDQLEVLQLGNNSLSGPIPSKLFNISTLTYLRLANNSLTGILPSDMGYGLPNLEQLHMYSNKLIGNIPNTISNSSKLTIVDLGENRFSGIIPNSFGDLTLLESLLIAGNNLTTYDSPELNFLTSLTSCRHLTYLEVTGNSLLSKLPKSIGNLSKSLEQFVANSCRIDGDIPLEIGNMSNLIRLSLNRNNMNGPMPATIKGLKKLQYFGLAYNGLQGSIIDELCQIRSLSQLYLTKNNLSGVLPTCLGNMTSLRKIYMGSNKLISQIPSSFWSLKDILEVNFSSNALTGNLPLEIGQLRALVLLDLSGNEISSNIPTTISFLKTLQFLSLAQNKLQGSIPPSLSEMVSLSFLDLSQNLLSGVIPKSLESLVYLKYINFSYNRLQGEIPDDGPFKNLTAQSFMHNEALCGNPRLQVPLCGKQDKRKSVTKTLLIKCMLPIIVSIILVVTCIILLQHKRKKVENSAEMDLSGLGALRRISYYELIQATNGFSESNLLGKGSFGCVYQGMLSNGKMVAIKVIDLALEATSKSFDAECNAMRNLRHRNLVKIISSCSNVDFKSLVMEFMSNGSLDKWLYSDHYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMIGHVSDFGIAKLLDEGQSKTHTETLATLGYIAPEYGSKGIVSIKGDVYSYGIMLMEVFTGKKPIDGMFAAKLSLRNWINESIPNSIMGVVDSNLVQQHGEQIASILSLALSCCADSPEARLNMTHVTASLTKIKTLYTQY. 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04535 1199 Gene3D Transferase(Phosphotransferase) domain 1 1000 1198 - -
Seca6g04535 1199 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 695 1182 - -
Seca6g04535 1199 ProSiteProfiles Protein kinase domain profile. 924 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04535 1199 Gene3D Ribonuclease Inhibitor 185 288 IPR032675 -
Seca6g04535 1199 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Seca6g04535 1199 FunFam Leucine-rich repeat receptor-like protein kinase TDR 234 486 - -
Seca6g04535 1199 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 560 857 - -
Seca6g04535 1199 ProSiteProfiles Leucine-rich repeat profile. 147 169 IPR001611 GO:0005515
Seca6g04535 1199 SMART LRR_sd22_2 193 219 - -
Seca6g04535 1199 SMART LRR_sd22_2 486 505 - -
Seca6g04535 1199 SMART LRR_sd22_2 437 463 - -
Seca6g04535 1199 SMART LRR_sd22_2 145 171 - -
Seca6g04535 1199 SMART LRR_sd22_2 733 752 - -
Seca6g04535 1199 SMART LRR_sd22_2 685 704 - -
Seca6g04535 1199 SMART LRR_sd22_2 564 590 - -
Seca6g04535 1199 SMART LRR_sd22_2 781 802 - -
Seca6g04535 1199 SMART LRR_sd22_2 339 365 - -
Seca6g04535 1199 SMART LRR_sd22_2 757 780 - -
Seca6g04535 1199 SUPERFAMILY RNI-like 486 824 - -
Seca6g04535 1199 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Seca6g04535 1199 SUPERFAMILY Protein kinase-like (PK-like) 906 1189 IPR011009 -
Seca6g04535 1199 Gene3D Phosphorylase Kinase; domain 1 907 999 - -
Seca6g04535 1199 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1000 1199 - -
Seca6g04535 1199 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 172 233 - -
Seca6g04535 1199 Pfam Leucine rich repeat 439 499 IPR001611 GO:0005515
Seca6g04535 1199 Pfam Leucine rich repeat 144 177 IPR001611 GO:0005515
Seca6g04535 1199 Pfam Leucine rich repeat 194 254 IPR001611 GO:0005515
Seca6g04535 1199 ProSitePatterns Protein kinases ATP-binding region signature. 930 952 IPR017441 GO:0005524
Seca6g04535 1199 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1043 1055 IPR008271 GO:0004672|GO:0006468
Seca6g04535 1199 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 29 171 - -
Seca6g04535 1199 PRINTS Leucine-rich repeat signature 148 161 - -
Seca6g04535 1199 PRINTS Leucine-rich repeat signature 217 230 - -
Seca6g04535 1199 FunFam Serine-threonine protein kinase plant-type 905 999 - -
Seca6g04535 1199 Gene3D Ribonuclease Inhibitor 561 853 IPR032675 -
Seca6g04535 1199 Gene3D Ribonuclease Inhibitor 479 560 IPR032675 -
Seca6g04535 1199 SMART LRR_typ_2 339 363 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 733 757 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 241 265 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 486 510 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 685 709 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 145 169 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 781 804 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 661 684 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 511 533 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 437 461 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 389 413 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 193 217 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 290 313 IPR003591 -
Seca6g04535 1199 SMART LRR_typ_2 97 121 IPR003591 -
Seca6g04535 1199 SUPERFAMILY L domain-like 42 382 - -
Seca6g04535 1199 Gene3D Ribonuclease Inhibitor 289 478 IPR032675 -
Seca6g04535 1199 SMART serkin_6 924 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04535 1199 Pfam Protein kinase domain 925 1186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04535 1199 SUPERFAMILY L domain-like 376 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04535 Seca-Chr6 112975244 112982406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04535 584 842 Receptor kinase-like Gene Family AT3G47570 29.119 3.38e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca6g04535 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04535 - K13420 gmx:100784397 1291.17