Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04515 ATGATTATCCCAGTATCAGCCTCAGCCTGCAAACAAGAACTGCCCCTAGTAGATTTCCAAAAGGGGCTACCCATGAAGTCTTTATTTCACCATCGTAATAAGGATAAGGTGATAGTCATAATGGGGGCCACGGGCACCGGCAAGACGAAGTTAGCCATAGACGTGGCCAAACATTTCCAACCAGCAGAGATAGTGAACTCAGATAAAATACAAGTTTACAAAGGTCTTGACATCACAACCAATAAGGTTACAGAGGAAGAGTGTGCTGGGGTCCCACACCATCTCTTAGGAGTAATTGATCCTAACTCAAATTTCACTGCCACTGATTTTTGTCGCCATGCCTGTTCCGCCATCGATTCCATAGTAGAAAGAGATGGTTTACCCATCATTGCTGGGGGTTCCAATTCCTACATAGATGCTTTGGTGAACCACCACCCAGGGTTTCGGTTAAGGTACGACTGTTGCTTCCTCTGGGTGGATGTTTCACTCCCTGTTCTCCATTCCTCACTGCAGGCACGTGTGGATCGCATGATTGAAGCTGGCCAAGTTGAAGAGGTTCGTGAATTCTTCGACCCTTTTGGTGATTACACGAGAGGGATTCGAAGAGCAATTGGGGTGCCTGAATTTGACGATTTTCTAAAAGCAGAGGCAAACGCAGCCGATGAAAGAACCAAAAAGAGGCTCCTTGAGGCTGCCATTGCAAGGATCAAAATCAACAACTGCACGCTAGCGAATCGACAGCTCCAGAAGATTCATCGACTCTACAGCTTGTGGAAGAGAAGCATGCACCGTCTTGATGCCACCGAGTCATTCCTGAGAAGGGGTTGTGCCTGTGTGGAAGCATGGGAGAATCATGTGCTTGCAAGGAGCCTCATGATTCTTCACAATTTCCTCTACAAGGAAAAGACCCATCTAATTGTGTCCACAAAAGATGTAATTGCTGCTGTTTCTTCGCCACCGCCGCCGGTATCATTGCCCGCCGTTGCGGCGGTAACTCATTAG 1002 0.475 MIIPVSASACKQELPLVDFQKGLPMKSLFHHRNKDKVIVIMGATGTGKTKLAIDVAKHFQPAEIVNSDKIQVYKGLDITTNKVTEEECAGVPHHLLGVIDPNSNFTATDFCRHACSAIDSIVERDGLPIIAGGSNSYIDALVNHHPGFRLRYDCCFLWVDVSLPVLHSSLQARVDRMIEAGQVEEVREFFDPFGDYTRGIRRAIGVPEFDDFLKAEANAADERTKKRLLEAAIARIKINNCTLANRQLQKIHRLYSLWKRSMHRLDATESFLRRGCACVEAWENHVLARSLMILHNFLYKEKTHLIVSTKDVIAAVSSPPPPVSLPAVAAVTH. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04515 333 Gene3D - 34 298 IPR027417 -
Seca6g04515 333 Pfam IPP transferase 71 144 - -
Seca6g04515 333 Pfam IPP transferase 151 249 - -
Seca6g04515 333 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 262 - -
Seca6g04515 333 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 297 IPR039657 -
Seca6g04515 333 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 262 - -
Seca6g04515 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 194 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04515 Seca-Chr6 112784664 112786646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04515 151 301 C2H2 Transcription Factor Family AT2G27760 33.333 6.60e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04515 K10760 - gmx:100812928 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04515 6 112784664 112786646 Seca6g04515 6 112784664 112786646 ECH
Seca12g00226 12 2088403 2091095 Seca6g04515 6 112784664 112786646 PCT