Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04510 ATGGGTATTTCCTGGAGTAGCAGAAGAAGAAACAATTTTATTCAGAACCCACCTCCACCACCCCCTCTTCCACCGCCTTACTATTACTCTGCTGAATCCCACCCTCCACCGCCACCTCCTCCCCCGCCGCAAGGTTACTACTTTCCCTCTACAACCCCTTATACCCCACACTGTACTAACTATGTCTCTCCCCCTCCTTTGCCCCCACCACAAACCCACTCCTACTACTATTCTAACCCCAATGGCTACACCAACTATGGCGTGGGTCGCGTTCATTACCACCCTTTCTATGTGAATCAACATGGTTGGGCTCCACCTCGCCCTTGTGCTGCTCCTCCCTCCAACCCACCACCCTATGTCGACCATCAAACTGCTAAGAAGATCAGAAACTATGTCAATGTCCACAAAGACACCTTACGCCTTGAGGTTGATGACCACAACCCTGATCACCACCTCGTTACCTTCGTTTTTGATGCTGTTTATGATGGCAGCATAACTATCTTCTACTTTGCCAAGGAAGAAGAGAAATGTAGGTTTGTTCCACTATATCCTGATGCATTTGAGCCAGTCAGGATCCCTTTTCAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGGATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGTCCTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACATGTTTGAAAACTCCCTCAGCAGCCGAAACTCCTGATGATTCCATGCTCGACGCATCCCCTCACATGCAAGTAACTCAAGGTGTCCTAGAGAAAAGAAATGGTAGCGGTCCTTTCCAGATAAAAGTAGTTAGGCAGATTCTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAATTATATGGAATTGGAAGCTCCGCAGCAACAGATTTTGATGACAGTGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACGGCTGTGTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAGATGAACAATGGCGATCAATGA 1119 0.4647 MGISWSSRRRNNFIQNPPPPPPLPPPYYYSAESHPPPPPPPPPQGYYFPSTTPYTPHCTNYVSPPPLPPPQTHSYYYSNPNGYTNYGVGRVHYHPFYVNQHGWAPPRPCAAPPSNPPPYVDHQTAKKIRNYVNVHKDTLRLEVDDHNPDHHLVTFVFDAVYDGSITIFYFAKEEEKCRFVPLYPDAFEPVRIPFQKGVGQKFAQPSGTGIDLGFFELDDLSKSSPGEDVFPLVICAETCLKTPSAAETPDDSMLDASPHMQVTQGVLEKRNGSGPFQIKVVRQILWIDGVRYELRELYGIGSSAATDFDDSDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKMNNGDQ. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04510 372 FunFam probable E3 ubiquitin-protein ligase LOG2 301 366 - -
Seca6g04510 372 Pfam Zinc finger, C3HC4 type (RING finger) 315 361 - -
Seca6g04510 372 SUPERFAMILY RING/U-box 316 362 - -
Seca6g04510 372 PANTHER MAHOGUNIN 1 367 IPR045194 GO:0061630
Seca6g04510 372 MobiDBLite consensus disorder prediction 14 48 - -
Seca6g04510 372 CDD mRING-HC-C3HC5_MGRN1-like 315 356 IPR045195 -
Seca6g04510 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 367 IPR013083 -
Seca6g04510 372 MobiDBLite consensus disorder prediction 1 48 - -
Seca6g04510 372 ProSiteProfiles Zinc finger RING-type profile. 317 356 IPR001841 -
Seca6g04510 372 SMART ring_2 317 355 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04510 Seca-Chr6 112714292 112720084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04510 89 372 C3H Transcription Factor Family AT3G06140 59.933 4.70e-113 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04510 - - gsj:114373285 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04510 6 112714292 112720084 Seca6g04510 6 112714292 112720084 ECH