Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04507 ATGTCTCACATAGCGGTTGAGAGGAACAGAAGAAAACAGATGAATGAACATCTCAAAGTTTTAAGGTCGTTGACTCCAAGTTTCTATATTAAAAGGGGAGACCAAGCATCTATCATAGGAGGAGTTATAGAGTTTATCAAGGAGTTGCATCAAGTTCTTCAAGCTTTGGAGTCCCAGAAGAGAAGGAAGAGTTTGAGCCCTAGCCCTGCTCCCAGTCCAAGAACACTGCAGCCAGTTCCCTTTCATCATCATCATCCATTTGATAACTCCTTATCCTCTGGAATTGGGACTAATAATTCATTCAAGGAACTAGGAGCAAGCTGCAACTCTTCTGTTGCGGATGTGGAAGTGAAAATCTCTGGCTCAAACGTGATTCTGAAAGTGATTTCTCACAGAATTCCTGGTCAAGTTGCAAAGATTATAACTGTTTTGGAAAGTCTTTCATTTGAAGTCCTTCATCTCAACATCAGTAGCATGGAGGAAACTGTCCTATACCAATTTGTTGTCAAGATAGAGCTGGGATGTCAACTGAGTCTGGAGGAACTAGCGATGGAAGTACAACAAAGCTTCTGCTCAGAGGCTATTAAGTTAACTGCGCTGTGA 603 0.4179 MSHIAVERNRRKQMNEHLKVLRSLTPSFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPAPSPRTLQPVPFHHHHPFDNSLSSGIGTNNSFKELGASCNSSVADVEVKISGSNVILKVISHRIPGQVAKIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAIKLTAL. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04507 200 MobiDBLite consensus disorder prediction 60 83 - -
Seca6g04507 200 SMART finulus 4 55 IPR011598 GO:0046983
Seca6g04507 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 69 IPR036638 GO:0046983
Seca6g04507 200 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Seca6g04507 200 FunFam Transcription factor MUTE 1 66 - -
Seca6g04507 200 Gene3D - 1 64 IPR036638 GO:0046983
Seca6g04507 200 PANTHER TRANSCRIPTION FACTOR FAMA 1 190 IPR044283 GO:0003700|GO:0010052
Seca6g04507 200 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04507 Seca-Chr6 112653018 112655099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04507 1 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.878 2.22e-84 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g04507 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04507 - - gmx:100810771 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04507 6 112653018 112655099 Seca6g04507 6 112653018 112655099 ECH