Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04491 ATGGCAAATTTCACCCCCTTCTCTTCATCATCATCTTCATCTCCTCCTCCATCTCTGTCTCACATTCCACCCATTTCACCTTCATCGTCTTCTGCTGCTTTCGACGACTCTTCCGAGGACTCCTGCAGTATATGTCTAGAGCCCTTCAGCATCGATGACCCATCTACTGTTACCTGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAATGGTCACAAAGAAGCAAAGAGTGCCCCATATGTTGGCAATTACTTGCCTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAACGCTTAAGATCAAGAAACATATATTCATCTTCATTCACACATTCCCGTGTCCCCCTTGAACGGCTTAATGATGACCATGAGGATTCTTGCTCAGATGACTCTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGAGCTCGTTTTGTTCACAGACAGGAAAGGCAGGGATCGTTTGCAGCAGGTCCATCAGAGGTTCTTGTTTTTAACTCTTCTGTGCATGTGTCCGGGGTGCAACCAACTCTTACAACTTCACCATCTGGGGGTAATTCACCAACTTCTGGTGTACCTCAACTTCAAACATCTTCTTTTTCCCCTATTGTTGATGAGGTTGCAAGAAATACTACTCCTGAGACTGATGTCCCTTACAGACCCAGAGTTCTCTATACCCAACCACCAACTGAGAGTGCAAGGAGACTAAACACTTCTGAGATGCTCTCCTTCCCTGAGTCCATCAAATCCAAATTTTCTGCTGCTTCAGCCAGGTAA 813 0.4526 MANFTPFSSSSSSSPPPSLSHIPPISPSSSSAAFDDSSEDSCSICLEPFSIDDPSTVTCCKHEYHLHCILEWSQRSKECPICWQLLALKDPASQELLAAVEAEKRLRSRNIYSSSFTHSRVPLERLNDDHEDSCSDDSDFDEQIMQHLVAAASRARFVHRQERQGSFAAGPSEVLVFNSSVHVSGVQPTLTTSPSGGNSPTSGVPQLQTSSFSPIVDEVARNTTPETDVPYRPRVLYTQPPTESARRLNTSEMLSFPESIKSKFSAASAR. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04491 270 SMART ring_2 42 82 IPR001841 -
Seca6g04491 270 Pfam Ring finger domain 40 82 IPR001841 -
Seca6g04491 270 ProSiteProfiles Zinc finger RING-type profile. 42 82 IPR001841 -
Seca6g04491 270 SUPERFAMILY RING/U-box 35 89 - -
Seca6g04491 270 MobiDBLite consensus disorder prediction 1 16 - -
Seca6g04491 270 FunFam E3 ubiquitin-protein ligase RHF1A 26 94 - -
Seca6g04491 270 MobiDBLite consensus disorder prediction 1 34 - -
Seca6g04491 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 113 IPR013083 -
Seca6g04491 270 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 13 91 - -
Seca6g04491 270 MobiDBLite consensus disorder prediction 186 252 - -
Seca6g04491 270 MobiDBLite consensus disorder prediction 186 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04491 Seca-Chr6 112411006 112414691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04491 36 90 C3H Transcription Factor Family AT4G00335 45.455 1.15e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04491 K19043 - gmx:100775754 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04491 6 112411006 112414691 Seca6g04491 6 112411006 112414691 ECH