Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04489 ATGATATCTTCAATCAAATGCACAACATCATCTCTCACCTGCTCTGCTTTCTCAAGCAGAAAGCTTCCTGTCCCAAGGCCTCAACTTTCCACATTACCCACCATTCAAAATGTTGAACAAAACACGGGTCCTTCTCTGTTGTGTTCCCAGAAACCTCTGTACCTTTCATCCACTGACAACTTGGCATTCCTCACAAATCCCAGAAGAAGGAACGTGACAGAGTGCCAGGCCTATGAGGCGGATAGGTCACGGCCACTAGAGATTAACATTGAGCTGCCTGGTCAAGAGGCAGCTCAGAGGCTCAAAATTGGGCTCTATTTTGCTACTTGGTGGGCTTTGAATGTGGTCTTCAACATATACAACAAGAAAGTCTTGAATGCTTTCCCTTACCCGTGGCTTACTTCTACTTTGTCCCTCGCTGCTGGCTCTCTCATGATGTTAATCTCGTGGGCCACCAGGGTTGCTGACGTCCCAAAAGTTAATTTTGATTTCTGGAAGGCCCTGTTTCCTGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCAAAGTTGCAGTTTCATTCACTCACATCATCAAGAGTGGAGAGCCTGCTTTCAGTGTCCTGGTATCAAGGTTCTTGCTTGGAGAAGCATTCCCCATGTCGGTTTACATGTCACTTGTGCCAATTATTGGTGGTTGTGCATTAGCTGCTGTGACAGAGCTCAATTTCAATATGATTGGCTTTATGGGGGCTATGATATCAAATTTGGCATTTGTCTTCAGGAATATATTCTCAAAGAAAGGGATGAAGGGGATGTCTGTTAGTGGAATGAACTACTATGCTTGTCTTTCCATATTGTCTCTATTAATTCTCACACCTTTTGCCATTGCTGTGGAGGGTCCCAAGGTGTGGGCTGCAGGATGGCAAACAGCTGTGTCTCAGATTGGCCCCAATTTTGTATGGTGGGTGGCTGCCCAGAGTGTCTTCTACCACTTGTATAATCAAGTCTCTTACATGTCCCTTGATCAGATTTCTCCCTTAACATTTAGTATAGGGAACACAATGAAGAGAATTTCTGTAATTGTCTCTTCCATCCTTATCTTTCACACGCCAGTCCAGCCCATCAATGCTCTTGGGGCTGCCATTGCAGTTCTTGGCACCTTCCTCTATTCACAGGCTAAGCAATAA 1185 0.454 MISSIKCTTSSLTCSAFSSRKLPVPRPQLSTLPTIQNVEQNTGPSLLCSQKPLYLSSTDNLAFLTNPRRRNVTECQAYEADRSRPLEINIELPGQEAAQRLKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLMMLISWATRVADVPKVNFDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPMSVYMSLVPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMSVSGMNYYACLSILSLLILTPFAIAVEGPKVWAAGWQTAVSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSILIFHTPVQPINALGAAIAVLGTFLYSQAKQ. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04489 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 293 391 - -
Seca6g04489 394 PANTHER SOLUTE CARRIER FAMILY 35 102 393 - -
Seca6g04489 394 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 101 393 IPR004696 GO:0016020|GO:0022857|GO:0055085
Seca6g04489 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 143 237 - -
Seca6g04489 394 Pfam Triose-phosphate Transporter family 101 390 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04489 Seca-Chr6 112386864 112390833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04489 20 394 Antiporters AT1G61800 76.862 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04489 K15283 K05350 gmx:100804205 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04489 6 112386864 112390833 Seca6g03089 6 97012262 97016669 ECH
Seca6g04489 6 112386864 112390833 Seca6g04489 6 112386864 112390833 ECH