Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04487 ATGGAAACCATTACAATACCATGTGTTGGTATGGAATTTGATGATGCAGAAAAAGCATGGGAGTTTTGGGTTGAATATGGTAAAAGAGCTGGCTTTGGAGTTAGAAAACTTTATTTAAACAAAAGGAAGAAAGATGGATTTATTAGATCATGTAGATTTGTTTGTTGTAAAGAGGGTTATCGAAAAACGGACAAGAGATCCTTTTTGGTTAAAAATCCCAGGGCTGAGACAAAAACTGGATGCGAAGCAAGAATTGGACTTTGCGAAAAGAATGGGAAGCTTGTAATCCACGAGTTCGTGGAGGCCCATAACCACCCTTTACAGCTTGCAGAAACAACACATATGCTAGCATCACACCGTAAAATAACTAAGGTTCAAGCATATGAAATTGAAATGGCAGAGGACTCTGGATTGGCGCAAAAGGCTTCATTTCAGCTTATGAGTGCACATGCAGGAAATAGAGCTAACCTTGGATATACACGATTAGATGCCAAAAACTATCTCAAAGCAAGAAGACAACGCAATATGGTATATGGGGAAGCCGGTAGTCTTATGCAGTATTTTCAACGCCAACAATTGGAGAATCCATCATTTTACCATGCATATCAAATGGACTGTGATGAACAAATCACAAATGTATTTTGGGCTGATGCAAAAATGATTTTAGATTATGGATATTTTGGTGATGTGATCTCTTTGGATACAACTTATTGTACTAATCGTGCTAATAGACCATTGGCATTGTTTTCAGGCTTCAACCATTATAGGGGAACAATCATTTTTGGGGCTGCACTGTTGTATGATGAAACGGCTGAATCGTTTAAATGGTTATTTGAAACATTTCTTGAAGCACATGGGAATAAAAAGCCTCAAACTTTGTTTACTGACCAAGACAAAGCAATGGCTAAAGCACTAGCTGAGGTGATGCCAGAGACTCGACATGGCTTATGCACATGGCACTTGATGCAAAATGGGATCAAACACCTTGGTAACTTAATGAAAAGAGGAAGTCATTTCTTGACTGACTTTAAAAAGTGCATGTATGATTATGACCAAGATGTGAAATTTGAGGTAGCTTGGAGCAAGTTGCTAGCTGAATATAATGTTAGCGAAAACAATTGGGTGAAATCAGTGTATGCTATCAAAGAAAAATGGGCAGCATGTTACATGAAGGAAGCACTCACCTTGGGAATGAGAAACACTCAACTTAGTGAGAGTTTGAACTCAAATTTTAAGGCTTGTATGAGACCTGATGTGAATGTCGTCCAATTCTTTAAGGACTTTGAGGGAGTTGTTGAGGAGAAACGATATAAAGAGTTAGTCTGTGAATATGAATCTCGACATAAACTACCAAAGTTGAGATATAATCATTCACCAATTCTAGTGCAACTTGCACAAGTATACACATATACAATCTTTGACATATTCCATGATGAGTTTGCCTTATTTTTAGCTGCTTGCATACAAGAGAGAAATGTATCTCAACTTCCATTTGAATATGTGATCACCTTGGTCAATGAGGAAGGAACATGGAGAGTGTTATTTGATCCTATGCAGTGCTTCATATCTTGCAGCTGTAGAAAATTTGAGACTTTCGGAATACTTTGTTGCCATGCATTAAAGGTTTTTGAGGCAAATGATGTTAAACTTGTCCCCGATCAATACATCCTAAAAAGATGGACAAGAGATGCACGCAATGGTATTATACATGATGTAAGGAGAAATGAGGTTGTGGCGGATCCCAAACTATGTAGCACACAACGGTATAGGCAACTTTGCTGCACTATGATTAGGTTGGCAGCTGAGGTATCGGATTCTGAAAAATTAAACCAACTTGTGGAGAAAGGGGTGCATGATTTGTGGAAGCAGGTGATGGAGATTCGGTTACAAGACAAAGCAAATGAATATGGTGAAGATGATGTCCCAACACTAACACAAGCAAAGGGGTTCAAGCATAGAGCTGGGTTAAAAAGGCATAAACGGTTAAAGAGTTGGGTTGAGCTTCAAACTAGACAAAAAAGAACTCCAACTATAAGACCTGCACCAAGTCAACATTCCAGGGTACATAAATTTATGCTTATAGCAACTTTCGTTTAA 2097 0.3829 METITIPCVGMEFDDAEKAWEFWVEYGKRAGFGVRKLYLNKRKKDGFIRSCRFVCCKEGYRKTDKRSFLVKNPRAETKTGCEARIGLCEKNGKLVIHEFVEAHNHPLQLAETTHMLASHRKITKVQAYEIEMAEDSGLAQKASFQLMSAHAGNRANLGYTRLDAKNYLKARRQRNMVYGEAGSLMQYFQRQQLENPSFYHAYQMDCDEQITNVFWADAKMILDYGYFGDVISLDTTYCTNRANRPLALFSGFNHYRGTIIFGAALLYDETAESFKWLFETFLEAHGNKKPQTLFTDQDKAMAKALAEVMPETRHGLCTWHLMQNGIKHLGNLMKRGSHFLTDFKKCMYDYDQDVKFEVAWSKLLAEYNVSENNWVKSVYAIKEKWAACYMKEALTLGMRNTQLSESLNSNFKACMRPDVNVVQFFKDFEGVVEEKRYKELVCEYESRHKLPKLRYNHSPILVQLAQVYTYTIFDIFHDEFALFLAACIQERNVSQLPFEYVITLVNEEGTWRVLFDPMQCFISCSCRKFETFGILCCHALKVFEANDVKLVPDQYILKRWTRDARNGIIHDVRRNEVVADPKLCSTQRYRQLCCTMIRLAAEVSDSEKLNQLVEKGVHDLWKQVMEIRLQDKANEYGEDDVPTLTQAKGFKHRAGLKRHKRLKSWVELQTRQKRTPTIRPAPSQHSRVHKFMLIATFV. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04487 698 SMART 26again6 522 549 IPR006564 GO:0008270
Seca6g04487 698 ProSiteProfiles Zinc finger SWIM-type profile. 500 547 IPR007527 GO:0008270
Seca6g04487 698 Pfam SWIM zinc finger 520 545 IPR007527 GO:0008270
Seca6g04487 698 Pfam FAR1 DNA-binding domain 21 108 IPR004330 -
Seca6g04487 698 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 6 623 IPR031052 GO:0006355
Seca6g04487 698 Pfam MULE transposase domain 230 324 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04487 Seca-Chr6 112364169 112366265 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g04487 MULE 4.7e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04487 - - smil:130990021 867.455