Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04482 ATGAGTTGCTTCCCATGTTGCAATAAGTCAGATGTTGAATCGTCCTCTTACAGAGCAAGCTCTAGGAAAATTTCCAAAGGCAGGAGAACATTCAAATCATTGGCAGCGGCTATGTCACTTAAATCAGGTAGCAGCAGGCATAGACAAATTAATGCAGAGTTACTAAAATATGGAGCTGCAAAAAATGATGTTAAAATATTCACATATGAAGAACTCGCTGAAGCAACAAAAAACTTCAGTCCTGATTGCCTGGTGGGCGAAGGTGGATTTGGGAATGTCTATAAAGGATACATAAAGAGCATTGAACAAACCGTAGCTGTGAAGCAACTCAACAGGGAAGGAGCTCAAGGAACACGAGAATTTTTTGCAGAGGTTTTGATGTTAAGCATGGTTAAACACCCAAACCTGGTCAGGTTAGTTGGTTATTGTGTAGAAGGTGATCAAAGGATTTTGGTTTACGAATTCATGGCCAACGGGAGTTTGGAAAGTCACCTTCTGGGTATGTCAAGTCAAGTGGTTAAAAAACATTCAAATTCTGACTTAGGTAAAGACAAGGAGCCATTGGATTGGCAGACAAGGATGAAAATAGCTGAGGGAGCAGCTAGAGGGCTTGAATATCTGCATAACAATGCAGATCCACCAGTGATATTCCGTGATTTCAAATCATCTAACATACTCTTAGATGAAGATTTCACTCCAAAGCTCTCTGATTTTGGACTCGCTAAGATTGCTCCAACAGAGGACCAAGAGTTTGTCAAAACAAGGGTGATGGGAACCTATGGCTACTGTGCACCTGAATATGCTGCTACGGGTCAGCTAACCTCAAAATCAGATATTTATAGCTTTGGGGTTGTGTTTCTGGAAATCATCACAGGTAGGAGAGTAATTGACACTGCAAGAGCTACAGAAGAGCAAAACTTGATTGATTGGGCACAACCTTTGTTTAAGGACAGAACCAAGTTTGCTCTGATGGCTGACCCTTTGCTTAAAGGTCAGTTCCCTGTGAAGGGTTTATTTCAAGCTCTGGCAGTGGCAGCAATGTGTCTCCAAGAGGAAGCTGACACACGACCTTTCATGGATGATGTTGTAACGGCTCTTCAGCATCTAGCAGTACGCAAAGTTGAAGAAAAAGACATTGCTGGTGAATCTGTAAAAATTGCTGGACATGTTGAATCTTTTAGAGCTATGAGTTCAATGGGATCTGAAAGGGCGTAG 1215 0.4181 MSCFPCCNKSDVESSSYRASSRKISKGRRTFKSLAAAMSLKSGSSRHRQINAELLKYGAAKNDVKIFTYEELAEATKNFSPDCLVGEGGFGNVYKGYIKSIEQTVAVKQLNREGAQGTREFFAEVLMLSMVKHPNLVRLVGYCVEGDQRILVYEFMANGSLESHLLGMSSQVVKKHSNSDLGKDKEPLDWQTRMKIAEGAARGLEYLHNNADPPVIFRDFKSSNILLDEDFTPKLSDFGLAKIAPTEDQEFVKTRVMGTYGYCAPEYAATGQLTSKSDIYSFGVVFLEIITGRRVIDTARATEEQNLIDWAQPLFKDRTKFALMADPLLKGQFPVKGLFQALAVAAMCLQEEADTRPFMDDVVTALQHLAVRKVEEKDIAGESVKIAGHVESFRAMSSMGSERA. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04482 404 ProSiteProfiles Protein kinase domain profile. 79 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04482 404 CDD STKc_IRAK 85 369 - -
Seca6g04482 404 FunFam probable serine/threonine-protein kinase RLCKVII 51 155 - -
Seca6g04482 404 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Seca6g04482 404 Gene3D Phosphorylase Kinase; domain 1 39 155 - -
Seca6g04482 404 Gene3D Transferase(Phosphotransferase) domain 1 156 389 - -
Seca6g04482 404 PANTHER OS07G0668900 PROTEIN 3 377 - -
Seca6g04482 404 FunFam Serine/threonine-protein kinase PBS1 156 384 - -
Seca6g04482 404 Pfam Protein kinase domain 84 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04482 404 SUPERFAMILY Protein kinase-like (PK-like) 64 372 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04482 Seca-Chr6 112320895 112323426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04482 1 371 Glycoside Hydrolase AT3G07070 54.377 4.39e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca6g04482 Pkinase 8.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04482 - - mtr:25486126 630.943