Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04473 ATGATGCAGCCTGGACCTGGCATGGCTCCACCCACCATGGGGCAGCAGCCACCCCAGCAGTACCAGCAGCCGCAGCAACCGCACTACGCCATGATGCCGCCGCAGGCTCAGGCGCAGGCTCCCATGTGGGCCCCCTCCTCCCAGCCTCCGCAGCAGCCCGCCAGCGCCGATGAGGTTCGTACCCTCTGGATCGGCGATCTGCAGTACTGGATGGACGAGAACTACATCTATACCTGCTTCGCTCACACCGGCGAGGTGACATCTGTGAAAGTGATTAGGAATAAGCAAACTGCTCAATCGGAAGGTTATGGGTTTATCGAGTTTAACAGTCGTGGTGCTGCGGAGAGAGTGCTTCAGACATACAATGGAACCATTATGCCGAACGGTGGGCAAAACTTCCGGTTGAATTGGGCAACTTTCAGTGCTGGAGAAAGGCGCCATGATGATACTCCTGATTACACCATATTTGTTGGTGACTTGGCTCCGGATGTTACTGATTATCTCCTTCAGGAGACGTTTAGGGCTCGTTATAACTCCATGAAGGGAGCCAAAGTCGTGATTGATAAGCTCACAGGCCGTTCTAAGGGTTATGGCTTTGTGAGGTTTGGAGATGAGAGTGAGCAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGAGGATTGGACCTGCCACTAATAAAAACCCTGCCACTCAGCCTAAAGGGTGTCAAGAGGCTCTATCATCTCGAAGCCTAGAAGTGATTTCAGCTGAAATGATTACCATTTTAGTGCATGTCCCTGCTTAG 804 0.5236 MMQPGPGMAPPTMGQQPPQQYQQPQQPHYAMMPPQAQAQAPMWAPSSQPPQQPASADEVRTLWIGDLQYWMDENYIYTCFAHTGEVTSVKVIRNKQTAQSEGYGFIEFNSRGAAERVLQTYNGTIMPNGGQNFRLNWATFSAGERRHDDTPDYTIFVGDLAPDVTDYLLQETFRARYNSMKGAKVVIDKLTGRSKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPATNKNPATQPKGCQEALSSRSLEVISAEMITILVHVPA. 268
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04473 267 Gene3D - 10 144 IPR012677 -
Seca6g04473 267 MobiDBLite consensus disorder prediction 40 55 - -
Seca6g04473 267 FunFam Polyadenylate-binding protein RBP45 10 144 - -
Seca6g04473 267 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 238 - -
Seca6g04473 267 CDD RRM1_SECp43_like 61 141 - -
Seca6g04473 267 CDD RRM2_SECp43_like 152 231 - -
Seca6g04473 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 232 IPR000504 GO:0003723
Seca6g04473 267 Gene3D - 145 241 IPR012677 -
Seca6g04473 267 FunFam Polyadenylate-binding protein RBP45C 145 237 - -
Seca6g04473 267 SMART rrm1_1 154 228 IPR000504 GO:0003723
Seca6g04473 267 SMART rrm1_1 61 136 IPR000504 GO:0003723
Seca6g04473 267 MobiDBLite consensus disorder prediction 14 32 - -
Seca6g04473 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 127 IPR000504 GO:0003723
Seca6g04473 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 218 IPR000504 GO:0003723
Seca6g04473 267 SUPERFAMILY RNA-binding domain, RBD 148 239 IPR035979 GO:0003676
Seca6g04473 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 140 IPR000504 GO:0003723
Seca6g04473 267 MobiDBLite consensus disorder prediction 1 57 - -
Seca6g04473 267 SUPERFAMILY RNA-binding domain, RBD 24 141 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca6g04473 Seca-Chr6 112278806 112280186 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04473 61 234 Eukaryotic Initiation Factors Gene Family AT4G34110 25.862 2.80e-14 70.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04473 - - aprc:113864230 373.629
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04473 6 112278806 112280186 Seca6g04473 6 112278806 112280186 ECH
Seca12g00193 12 1796392 1797956 Seca6g04473 6 112278806 112280186 PCT