Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca6g04473 | ATGATGCAGCCTGGACCTGGCATGGCTCCACCCACCATGGGGCAGCAGCCACCCCAGCAGTACCAGCAGCCGCAGCAACCGCACTACGCCATGATGCCGCCGCAGGCTCAGGCGCAGGCTCCCATGTGGGCCCCCTCCTCCCAGCCTCCGCAGCAGCCCGCCAGCGCCGATGAGGTTCGTACCCTCTGGATCGGCGATCTGCAGTACTGGATGGACGAGAACTACATCTATACCTGCTTCGCTCACACCGGCGAGGTGACATCTGTGAAAGTGATTAGGAATAAGCAAACTGCTCAATCGGAAGGTTATGGGTTTATCGAGTTTAACAGTCGTGGTGCTGCGGAGAGAGTGCTTCAGACATACAATGGAACCATTATGCCGAACGGTGGGCAAAACTTCCGGTTGAATTGGGCAACTTTCAGTGCTGGAGAAAGGCGCCATGATGATACTCCTGATTACACCATATTTGTTGGTGACTTGGCTCCGGATGTTACTGATTATCTCCTTCAGGAGACGTTTAGGGCTCGTTATAACTCCATGAAGGGAGCCAAAGTCGTGATTGATAAGCTCACAGGCCGTTCTAAGGGTTATGGCTTTGTGAGGTTTGGAGATGAGAGTGAGCAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGAGGATTGGACCTGCCACTAATAAAAACCCTGCCACTCAGCCTAAAGGGTGTCAAGAGGCTCTATCATCTCGAAGCCTAGAAGTGATTTCAGCTGAAATGATTACCATTTTAGTGCATGTCCCTGCTTAG | 804 | 0.5236 | MMQPGPGMAPPTMGQQPPQQYQQPQQPHYAMMPPQAQAQAPMWAPSSQPPQQPASADEVRTLWIGDLQYWMDENYIYTCFAHTGEVTSVKVIRNKQTAQSEGYGFIEFNSRGAAERVLQTYNGTIMPNGGQNFRLNWATFSAGERRHDDTPDYTIFVGDLAPDVTDYLLQETFRARYNSMKGAKVVIDKLTGRSKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPATNKNPATQPKGCQEALSSRSLEVISAEMITILVHVPA. | 268 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca6g04473 | 267 | Gene3D | - | 10 | 144 | IPR012677 | - | |
Seca6g04473 | 267 | MobiDBLite | consensus disorder prediction | 40 | 55 | - | - | |
Seca6g04473 | 267 | FunFam | Polyadenylate-binding protein RBP45 | 10 | 144 | - | - | |
Seca6g04473 | 267 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 51 | 238 | - | - | |
Seca6g04473 | 267 | CDD | RRM1_SECp43_like | 61 | 141 | - | - | |
Seca6g04473 | 267 | CDD | RRM2_SECp43_like | 152 | 231 | - | - | |
Seca6g04473 | 267 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 153 | 232 | IPR000504 | GO:0003723 | |
Seca6g04473 | 267 | Gene3D | - | 145 | 241 | IPR012677 | - | |
Seca6g04473 | 267 | FunFam | Polyadenylate-binding protein RBP45C | 145 | 237 | - | - | |
Seca6g04473 | 267 | SMART | rrm1_1 | 154 | 228 | IPR000504 | GO:0003723 | |
Seca6g04473 | 267 | SMART | rrm1_1 | 61 | 136 | IPR000504 | GO:0003723 | |
Seca6g04473 | 267 | MobiDBLite | consensus disorder prediction | 14 | 32 | - | - | |
Seca6g04473 | 267 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 62 | 127 | IPR000504 | GO:0003723 | |
Seca6g04473 | 267 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 155 | 218 | IPR000504 | GO:0003723 | |
Seca6g04473 | 267 | SUPERFAMILY | RNA-binding domain, RBD | 148 | 239 | IPR035979 | GO:0003676 | |
Seca6g04473 | 267 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 140 | IPR000504 | GO:0003723 | |
Seca6g04473 | 267 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Seca6g04473 | 267 | SUPERFAMILY | RNA-binding domain, RBD | 24 | 141 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca6g04473 | Seca-Chr6 | 112278806 | 112280186 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca6g04473 | 61 | 234 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.862 | 2.80e-14 | 70.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca6g04473 | - | - | aprc:113864230 | 373.629 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca6g04473 | 6 | 112278806 | 112280186 | Seca6g04473 | 6 | 112278806 | 112280186 | ECH | |
Seca12g00193 | 12 | 1796392 | 1797956 | Seca6g04473 | 6 | 112278806 | 112280186 | PCT |