Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04472 ATGTCTTCATATCAGAACCCTCAAGGCACACAAAATGGGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGGAAGCGATGTGGATTTGTCCAATTTTCTGACAGGAGCTGTGCAGAAGAGGCACTACAAATTTTAAATGGGACGCTGTTGGGTGGACAAAATGTCCGTTTGTCTTGGGGACGTAGTCCTTCAAACAAACAGGCTCAGGCAGATCCAAACCAGTGGAATGGTAGTGGACATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATCCTCCTGCTGGACAGGATCCCAACATGTATGGCAGTTATCCGGGGTATGCGGGTTACCAACCACCACAGCAACAGCAGCAAATGGGTTATAGTTGA 459 0.4379 MSSYQNPQGTQNGNDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFSDRSCAEEALQILNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGSGHYGYAQGYENYGYPPAGQDPNMYGSYPGYAGYQPPQQQQQMGYS. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04472 152 SUPERFAMILY RNA-binding domain, RBD 6 115 IPR035979 GO:0003676
Seca6g04472 152 Gene3D - 2 100 IPR012677 -
Seca6g04472 152 MobiDBLite consensus disorder prediction 1 20 - -
Seca6g04472 152 MobiDBLite consensus disorder prediction 89 108 - -
Seca6g04472 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Seca6g04472 152 FunFam Polyadenylate-binding protein RBP45C 1 101 - -
Seca6g04472 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Seca6g04472 152 PANTHER GEO13361P1-RELATED 15 148 - -
Seca6g04472 152 MobiDBLite consensus disorder prediction 124 152 - -
Seca6g04472 152 SMART rrm1_1 20 87 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04472 Seca-Chr6 112276792 112277902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04472 13 98 Eukaryotic Initiation Factors Gene Family AT2G23350 32.967 2.10e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04472 - - aprc:113864230 263.848