Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04464 ATGAGCGACTCAAAGCCTGCAACTGCCAACAATGGTCAATATGTCCAAGAGAAGAGACCATGTGAGAGGGCTCCTATGCTGGAATTTTCTCCACAAGAGGAGGATCTCGTTGCTAGAATGTTTAGATTGGTTGGAAACAGGTGGTCCCTTATTGCTGGGAGAATCCCTGGAAGGTCTGCTGAAGAGATTGAAAAATATTGGACTTCAAAGTGGTGA 216 0.4537 MSDSKPATANNGQYVQEKRPCERAPMLEFSPQEEDLVARMFRLVGNRWSLIAGRIPGRSAEEIEKYWTSKW. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04464 71 FunFam MYB-like transcription factor 28 70 - -
Seca6g04464 71 Pfam Myb-like DNA-binding domain 28 67 IPR001005 -
Seca6g04464 71 CDD SANT 28 67 IPR001005 -
Seca6g04464 71 ProSiteProfiles Myb-like domain profile. 29 71 IPR001005 -
Seca6g04464 71 SUPERFAMILY Homeodomain-like 29 69 IPR009057 -
Seca6g04464 71 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 71 IPR017930 -
Seca6g04464 71 SMART sant 25 71 IPR001005 -
Seca6g04464 71 Gene3D - 28 70 - -
Seca6g04464 71 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 28 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04464 Seca-Chr6 112174389 112175328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04464 29 69 MYB Transcription Factor Family AT5G52600 60.976 5.50e-15 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca6g04464 Myb_DNA-binding 2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04464 - - tpra:123897785 96.6709