Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04447 ATGAGGGTTCAACCTGCTGAAACCTCTCTCAAATTGTCCCCAACTCCAACTCTGTCTTCTTCCTCTTCTTCTCTTGTTAGCAGTGTTGTTGATAACAATAATATTCCTAATTCTGGGTTGAGATCGGCCACTCGCCGGCGTTCCGGTTCTCATCAGCCTCAAGAGCTAAGCCTGAAAATAACGCCAATGGTTAGACCTTATGTTCGATCAAAAATGCCTCGCCTTCGTTGGACACCAGATCTCCACCGTTGCTTCGTGCATGCAGTTCAGAGGCTTGGAGGAGAAGACAGGGCCACACCAAAGTTAGTTTTACAGCTAATGAATGTAAAGGGGCTCACCATATCTCATGTTAAAAGCCACCTTCAGATGTACAGGAGCATGAAGCACGAGCAGATGAGTCAAGAAGCAAAGAAGAATGATATGGCACCGGAGTTGTTAACTTCCTCATTCTCCTCAACCTTTGGACCAAGCAACGGTCAACAGAATCGTCCCCAAAGGAGCTGCGGAACTCATTATACTGAAGAGCTTTCTCGCACCCAAGCTCAATGGAGTCCTTATCATGAGCAGGAGAGTTACGATGGAAAGCAGGGGAGTGAATCGATTATCATGTGCAACAGCGATGAACAAAAGATACACACCTACATCATCTTCCAGGATCTTCTCAGAAGCCAGACTGTCCAAGAGAACAAAAATCCTCCTGAAAAGTTGTCACTAGCTGGGGCTGCTGGTTATAATAGCGACCATCAAAGATTCCAAGATTTAACCCCCATAGGAGAGAGAGTGGATGAAGACATACTGTCCCTGTCAATGAGCTCAACAGCTTCACTTCCATTCTTCAATCCGACCCACCCAAGTCCAGATTCAAATGATGTCTCTCTTGAGCTCACCCTCGCTTAG 897 0.4627 MRVQPAETSLKLSPTPTLSSSSSSLVSSVVDNNNIPNSGLRSATRRRSGSHQPQELSLKITPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQLMNVKGLTISHVKSHLQMYRSMKHEQMSQEAKKNDMAPELLTSSFSSTFGPSNGQQNRPQRSCGTHYTEELSRTQAQWSPYHEQESYDGKQGSESIIMCNSDEQKIHTYIIFQDLLRSQTVQENKNPPEKLSLAGAAGYNSDHQRFQDLTPIGERVDEDILSLSMSSTASLPFFNPTHPSPDSNDVSLELTLA. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04447 298 MobiDBLite consensus disorder prediction 147 174 - -
Seca6g04447 298 NCBIfam myb-like DNA-binding domain, SHAQKYF class 73 127 IPR006447 GO:0003677
Seca6g04447 298 Gene3D - 72 130 - -
Seca6g04447 298 MobiDBLite consensus disorder prediction 1 54 - -
Seca6g04447 298 SUPERFAMILY Homeodomain-like 71 127 IPR009057 -
Seca6g04447 298 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 48 172 IPR046955 GO:0003700
Seca6g04447 298 FunFam Myb family transcription factor 71 129 - -
Seca6g04447 298 MobiDBLite consensus disorder prediction 8 54 - -
Seca6g04447 298 MobiDBLite consensus disorder prediction 179 198 - -
Seca6g04447 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 129 IPR017930 -
Seca6g04447 298 Pfam Myb-like DNA-binding domain 75 125 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04447 Seca-Chr6 112021445 112025171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04447 59 130 G2-like Transcription Factor Family AT2G42660 76.389 2.21e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca6g04447 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04447 - - pvu:PHAVU_006G149000g 322.783