Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04440 ATGGAGGACTGGACTAGGGGCCGCACCCTTGGCCGGGGCTCCACCGCCGCCGTCTACATCGCCGAGAATCGCCGGTCCGGTCAAGTGTTCGCCGTGAAATCTTCAGAGCTTCACCACTCTGAATTCCTCAAGAGGGAGCAGGGGATTCTCTCCACATTGAAGTGTCCTCAAATTGTGGCTTATCAAGGCTGTGACGTCACGTTTGAGAATGGTGCTTACTGGTTCAACTTGTTCATGGAGTACGCACCTCAGGGGACGCTCGCAGATGCAGTTCGCGAGCACAATGGTGGAACTGGAATGGAAGAAACCATGGTGGGTTCCTACGCACGCCAAATTCTGCTCGGGCTCAACTACCTCCACTCCAATGGGATAGTACATTGCGACGTGAAGGGACAGAACGTGTTGTTGACGGAGCAGGGTGCCAAAATTGCTGACTTGGGTTGCGCTCGGAGGGTCGGGGATTCGACGGCGATCGCCGGAACGCCGGTGTTCATGGCACCGGAGGTGGCGCGTGGGGAGCAGCAGGGGTTCCCTGCTGACGTGTGGGCTCTGGGGTGTACCGTGCTGGAGATGATCACCGGGAAGCCGCCGTGGCGCGGGGTTTCTGATCCGGCGGCGGCGATGTATAGGATCGGATTCTCCGGCGAGGTTCCGGAGATTCCGACCTCTGTTTCGGAGCAGGGGAAGGACTTTTTGAGCAAGTGTTTGAAGAGAGACCCCAATGAGAGGTGGTCTGTGGGGGAGCTTCTGGGACACGGATTCGTTGGGGAATGCAAGGAACCATCAACGTTGGATTCCGACACTCCCACGACTGTGTTGGAACGAGGGTTTTGGGACTTGTTGGACACAACTCAGGGTCCCACATCACCTGATTATTGTTCCTCGGGAGACAGGATTCGTAGGTTGTTTTCTGATGAGCCTGTTTGGGAATGGGACGATGATGATCAATGGGTCACGGTGAGAAGCAATGACAAGGAGTTAGATGCAATGTCTGTTCAGAAAATGGAGGATTGTGGATCAGACACTGTTAGTGACCAGGAGAACAGTTTGGTAGTAACTTTTTATGAACCGAAAATTGTAGTTGCTAATGTAATTGAATTGAGTAGATGGAATGCCATTATTGATGATTGTTACCTTAGCAACAGCAACAGTAGCTGTCGCAATAGAGAATTATTATTATCAGTTTGTCCATGTCGAAAGATTGTTCCCCATGGAAAATTTGATTCTCTCAACAAAGAAATTTTTATCATGCACCGCTTTCTGTTCTCTCTTTCTCTCTTTAATTCCACTTTGGATGAATTGAACGCTTTACAGTTTAAAATTAAAATATTAATTGGATAA 1341 0.5026 MEDWTRGRTLGRGSTAAVYIAENRRSGQVFAVKSSELHHSEFLKREQGILSTLKCPQIVAYQGCDVTFENGAYWFNLFMEYAPQGTLADAVREHNGGTGMEETMVGSYARQILLGLNYLHSNGIVHCDVKGQNVLLTEQGAKIADLGCARRVGDSTAIAGTPVFMAPEVARGEQQGFPADVWALGCTVLEMITGKPPWRGVSDPAAAMYRIGFSGEVPEIPTSVSEQGKDFLSKCLKRDPNERWSVGELLGHGFVGECKEPSTLDSDTPTTVLERGFWDLLDTTQGPTSPDYCSSGDRIRRLFSDEPVWEWDDDDQWVTVRSNDKELDAMSVQKMEDCGSDTVSDQENSLVVTFYEPKIVVANVIELSRWNAIIDDCYLSNSNSSCRNRELLLSVCPCRKIVPHGKFDSLNKEIFIMHRFLFSLSLFNSTLDELNALQFKIKILIG. 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04440 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Seca6g04440 446 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca6g04440 446 SMART serkin_6 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04440 446 CDD STKc_MAPKKK 3 255 - -
Seca6g04440 446 ProSiteProfiles Protein kinase domain profile. 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04440 446 Gene3D Transferase(Phosphotransferase) domain 1 88 263 - -
Seca6g04440 446 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 329 - -
Seca6g04440 446 Pfam Protein kinase domain 5 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04440 446 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Seca6g04440 446 SUPERFAMILY Protein kinase-like (PK-like) 1 273 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04440 Seca-Chr6 111963744 111965084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04440 2 354 MAP Kinase Kinase Kinase AT5G55090 46.053 2.21e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca6g04440 Pkinase 1.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04440 K20716 - gmx:100802174 540.036