Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04428 ATGTCAAGGTTCTCAAGAGATTTTGGAATTTCTATGAGAAAGGTTCAAGAAATTGATAAACATGTTATTACAATATCTCAGTCAATAGGGGAGGGAAGCACTATCATATGTTCAAAGAGGACTACTAAACTTCCATCAAGGAAGGGACATGAGGCAAAGAGGTGTTTTACTAGCTCAAACAATAAAAGAAAATTTGAAGATAATATCTTGAATAACAATTTGGAAGAAGATGAGGAGGTTCTTTTTCTTTCAAAGACAGCGTTCAGAAGCAAAGCTAGAAAAATGGATAATATGATGGACACTGAACAAAATTCCAAAATATGTCATCAGTGCATGAAAAGGGAAAGAGCAGCATTTGTACCCTGTACTAAATGTCTGAAAATGTACTGTTTGCGGTGCATCAAGCAATGGTATCCCAATATGTCAATAGGAGATATTGCAGCGAGGTGCCCCTTTTGCCGTAAAAATTGCAATTGCAATGTTTGCTTGCACTCCAGAGGAACAATTAAGACATCTAACAGGAACATCTCAGATTGTGAAAAAGTTCAGCATCTCCAATATATAATCAACTCACTTCTTCCATTTATGCAACAAATTTGTGAAGAACAGAGTCAAGAGCAAGAGATTGAAGCTAAAATACAAGGAAAATCATGTTCTGAGATTGAGATACCACAAACTCCATGTGATGACGATGAGCGTATCTATTGTGACCATTGTGCTACATCAATTATTGACCTTCATAGAAGCTGCCCCAAGTGTTCCTTTGAAATCTGCCTAAGTTGTTGCCAAGAAATACGCAATGGAAGTATTTCACCCCGGTCTGAAATGAAGTTTCAATATGTGTTTAAGGGCTATGATTATATGCATGGTGGTGATCCATTACCAGTGTCTTGTGATGATTTAGGGACTTCAGAGAGTCATGTTGAGTTATCTACCAAATGGAAAGCCAACAGTGATGGAAGTGTTAGGTGTGCTCCAAAAGAATGGGGAGGTTGTGGTGGCTGTGTGTTGGAGCTGAAGTGCATGCTTCCAAATGGGTGGATATCTGACTTGGAAGCCAGAGCTCGTCACATGCAAAAATTTTTTTGCAAAATTGAACAAACAGCACTTCAGAAAGAAGCAGCATCAAGTTGCAATTCTGTGATAAGAGCTGCATTTAGAGATGGCACAAATGATAATAACATATACTATCCAGCATCAAATGACCTCGTAAAAGAAGGGCTATTTCACTTCCAAAAGCATTGGATTAATGGTGAACCAGTTATAGTCCGTGATGTCCTTAAACAAGGGACAGGTCTGAGTTGGGAGCCAATGGTCACCTGGCGAGCATTAAGTGAAAAATTGGATTCAGGGATCAGCTCAAATATGTCACAAGTGAAGGCCATTGATTGCCTGACTAGTTGTGAGGTAGAAATCAACACTCTCAAGTTCTTTAAAGGTTATACAGAAGGGAGAACATATAACAATCTGTGGCCAGAGATGCTCAAGCTGAAAGACTGGCCCCCCTCTGACAAGTTTGAAAATCTTTTGCCCCGCCATTGTGATGAGTTTATCCGTTGCTTGCCATTTCAAGAGTATAGTGATCCTCGAGCTGGAATCCTCAACCTTGCTGTAAGGTTGCCAAACCATATCCTAAAACCTGACTTGGGTCCAAAAACGTATATTGCTTATGGGATTAGAGAAGAACTTGGCAGAGGAGATTCTGTAACAAAACTTCATTGTGATATGGCAGATGCGGTGAATATTTTGACCCATACATCTGAGGTGATATTAACTGATGAACAGCACTCTGTTATTTCACAAGTAAAAAAAGCACACAAGGCCCAAGATGAGAAAGAGCGTGGTGCTCAAGCTAGTGTTGCTGAAAGCCTGAATGAAGGACCTTGGAAAGACAAAAGAGAACATAGAAAAGATAAGAGCCCTATTAAGATCAATGGAAAGATCTTTCCAGATGAAGTTCCTACAATCTCTAAAGAAACAAGAGAAACAGGTGGTGCTCTTTGGGACATCTTTCGGAGAGAGGATACTGAAAAGTTAGAAGCATATCTAAGAAAACACACTAAAGAATTTAGACATACTTATTTATCTCTAGTTGAACAGGTTGTCCATCCAATTCATGACCAATGTTTTTATTTGACTGTGGAGCACAAGAAGAAGCTGAAGGAGGAATATGGTGTAGAACCTTGGACATTTGAGCAGAAACTTGGAGAAGCAGTGTTTATTCCTGCTGGATGCCCTCACCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCTGCAGACTTTGTGTCCCCAGAAAATGTGCACGTGTGCATGCGTTTAACTGATGAGTTCCGTTGTCTTCCTAAGAATCATAAGGCCAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTCTATGCTGTTGACCAAGCTGTCAAAGAATTAGAAGCTGTAGTTAGGTGTTCGTGA 2451 0.3966 MSRFSRDFGISMRKVQEIDKHVITISQSIGEGSTIICSKRTTKLPSRKGHEAKRCFTSSNNKRKFEDNILNNNLEEDEEVLFLSKTAFRSKARKMDNMMDTEQNSKICHQCMKRERAAFVPCTKCLKMYCLRCIKQWYPNMSIGDIAARCPFCRKNCNCNVCLHSRGTIKTSNRNISDCEKVQHLQYIINSLLPFMQQICEEQSQEQEIEAKIQGKSCSEIEIPQTPCDDDERIYCDHCATSIIDLHRSCPKCSFEICLSCCQEIRNGSISPRSEMKFQYVFKGYDYMHGGDPLPVSCDDLGTSESHVELSTKWKANSDGSVRCAPKEWGGCGGCVLELKCMLPNGWISDLEARARHMQKFFCKIEQTALQKEAASSCNSVIRAAFRDGTNDNNIYYPASNDLVKEGLFHFQKHWINGEPVIVRDVLKQGTGLSWEPMVTWRALSEKLDSGISSNMSQVKAIDCLTSCEVEINTLKFFKGYTEGRTYNNLWPEMLKLKDWPPSDKFENLLPRHCDEFIRCLPFQEYSDPRAGILNLAVRLPNHILKPDLGPKTYIAYGIREELGRGDSVTKLHCDMADAVNILTHTSEVILTDEQHSVISQVKKAHKAQDEKERGAQASVAESLNEGPWKDKREHRKDKSPIKINGKIFPDEVPTISKETRETGGALWDIFRREDTEKLEAYLRKHTKEFRHTYLSLVEQVVHPIHDQCFYLTVEHKKKLKEEYGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHVCMRLTDEFRCLPKNHKAREDKLEIKKMIVYAVDQAVKELEAVVRCS. 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04428 816 MobiDBLite consensus disorder prediction 626 641 - -
Seca6g04428 816 Gene3D Cupin 395 788 - -
Seca6g04428 816 SUPERFAMILY Clavaminate synthase-like 412 814 - -
Seca6g04428 816 MobiDBLite consensus disorder prediction 606 641 - -
Seca6g04428 816 FunFam Transcription factor jumonji domain-containing protein 392 788 - -
Seca6g04428 816 Pfam JmjC domain, hydroxylase 666 762 IPR003347 -
Seca6g04428 816 ProSiteProfiles Zinc finger RING-type profile. 108 154 IPR001841 -
Seca6g04428 816 ProSiteProfiles JmjC domain profile. 529 779 IPR003347 -
Seca6g04428 816 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 58 811 IPR045109 GO:0032454|GO:0033169
Seca6g04428 816 CDD cupin_RmlC-like 703 751 - -
Seca6g04428 816 SMART cupin_9 510 779 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04428 Seca-Chr6 111870421 111875665 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca6g04428 JmjC 3.9e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04428 K15601 K21989 gmx:100801772 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04428 6 111870421 111875665 Seca6g04428 6 111870421 111875665 ECH
Seca12g00156 12 1483026 1489216 Seca6g04428 6 111870421 111875665 PCT