Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04427 ATGACCACACAACCAAACAGAAAACCATTGGTCTTGGTTCTAATGTTTATGTTGTTGATAATTAACAGAGCCCAAGGAAGGTGTTGGTCTGGTTGCAACCTTGCTCTAGCTTCCTATTACTTATGGGAAGGCACAAATCTCACTTACATTAGCAAGATTTTTGGGAAGCCAATCTCAGAGATTCTAAAATACAACCCGAGTGTGAAAATTCCTGATGTGATTCAGAGCGGAACAAGGATCAATGTGCCCTTCTCGTGTGAGTGCCTAAACGGTGAGTTCCTAGGCCACACTTTCTCTTACTTAACCCAACACGGAAACACATACACCATAATTGCCAAGGTTGATTTCTCAAACCTCACAACGGAGGAGTGGGTGAGAAGGGTCAACAGATATCATCCTAATGAGATACCCGACAACGTCAACATAAATGTCACCATCAACTGCTCCTGCGGAGACAGACACGTGTCAAAGGATTATGGTTTGTTTCTCACATACCCACTTCGCCCCGGTGACGACTTGCCGCGACTTGCGGCGGAATCCGGCGTGCAGGCGGAGCTGCTGCAGAGGTACAACCCTGCCTCGGATTTCACTGCCGGGAGTGGAATTGTGTTTGTGCCGGCCAAAGATGAAAATGGAAACTTTCCACCACTGCAGCTGGGAATAGGAATATCCGGTAGAGCCATTGCTGGCATTGCTGTTGGAGGGGCTGTTGGGATCTTATTGTTGGCACTTGCTATATATGTTGGGATATATAGAAGAAAGAAAGTGGATGAGGTAACCCTTCTCCCAGTCCCAGGAGCATCTGAAGATCAGTGTAGTCAACTCCAACATGGTTGTGGAAGCAGTGTGGACAAGGCATCAGAATCTTCTATTGTTGCTTCACCAAGGTTGACAGGTATTACAGTGGACAAGTCAGTGGAGTTCTCATATGAGGAGCTTGCCAAAGCTACTGATGGCTTTAGCACTGCTAATATAATTGGTCGAGGTGGCTTTGGATCTGTTTACTACGCTGAGCTTAGAAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAAAGAATTCCTTGCAGAACTAAAGGTTCTGACACATGTCCATCACTTGAACTTGGTGCGGTTAATAGGATATTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAGTACATTGAGAACGGCAATTTAAGTCAACATTTGCGTGTCTCAGGGAGGGATCCGTTATCATGGCCAGCTAGAGTTCAAATCGCCCTTGATGCAGCAAGAGGACTAGAATACATCCATGAGCATACAGTTCCTGTCTACATCCATCGAGATATCAAATCAGCCAACATTTTGATAGACAAAAATTTCCGTGGCAAGGTTGCAGATTTTGGTCTGACAAAACTGACTGAATATGGTAGTTCTTCATTACAAACACGTCTTGTGGGTACATTTGGTTATATGCCTCCAGAATATGCACAATATGGTGAAGTTTCCCCCAAAATAGATGTATATGCTTTTGGAGTTGTTCTCTATGAACTTGTATCTGGCAAGGAAGCTATTGTCAAGACAAACGAACCTGAGAACGAATCAAAAGGATTAGTTGCATTGGTTGTTTTTCCTGGCCTATCTTACCTCTTCAATAGTTGTAATTCATTTCATGTGTAG 1650 0.437 MTTQPNRKPLVLVLMFMLLIINRAQGRCWSGCNLALASYYLWEGTNLTYISKIFGKPISEILKYNPSVKIPDVIQSGTRINVPFSCECLNGEFLGHTFSYLTQHGNTYTIIAKVDFSNLTTEEWVRRVNRYHPNEIPDNVNINVTINCSCGDRHVSKDYGLFLTYPLRPGDDLPRLAAESGVQAELLQRYNPASDFTAGSGIVFVPAKDENGNFPPLQLGIGISGRAIAGIAVGGAVGILLLALAIYVGIYRRKKVDEVTLLPVPGASEDQCSQLQHGCGSSVDKASESSIVASPRLTGITVDKSVEFSYEELAKATDGFSTANIIGRGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRVSGRDPLSWPARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKIDVYAFGVVLYELVSGKEAIVKTNEPENESKGLVALVVFPGLSYLFNSCNSFHV. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04427 549 Pfam Protein tyrosine and serine/threonine kinase 323 517 IPR001245 GO:0004672|GO:0006468
Seca6g04427 549 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Seca6g04427 549 SMART serkin_6 320 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04427 549 FunFam PTI1-like tyrosine-protein kinase 3 391 538 - -
Seca6g04427 549 ProSiteProfiles LysM domain profile. 37 82 IPR018392 -
Seca6g04427 549 Gene3D Transferase(Phosphotransferase) domain 1 391 537 - -
Seca6g04427 549 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 10 532 IPR044812 GO:0019199|GO:0045087
Seca6g04427 549 SUPERFAMILY Protein kinase-like (PK-like) 300 528 IPR011009 -
Seca6g04427 549 FunFam LysM receptor kinase 2 299 390 - -
Seca6g04427 549 ProSiteProfiles Protein kinase domain profile. 320 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04427 549 Gene3D Phosphorylase Kinase; domain 1 301 390 - -
Seca6g04427 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04427 Seca-Chr6 111857231 111865674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04427 9 531 Receptor kinase-like Gene Family AT3G21630 55.159 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca6g04427 PK_Tyr_Ser-Thr 3.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04427 - K13429 gmx:100802308 850.892