Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca6g04427 | ATGACCACACAACCAAACAGAAAACCATTGGTCTTGGTTCTAATGTTTATGTTGTTGATAATTAACAGAGCCCAAGGAAGGTGTTGGTCTGGTTGCAACCTTGCTCTAGCTTCCTATTACTTATGGGAAGGCACAAATCTCACTTACATTAGCAAGATTTTTGGGAAGCCAATCTCAGAGATTCTAAAATACAACCCGAGTGTGAAAATTCCTGATGTGATTCAGAGCGGAACAAGGATCAATGTGCCCTTCTCGTGTGAGTGCCTAAACGGTGAGTTCCTAGGCCACACTTTCTCTTACTTAACCCAACACGGAAACACATACACCATAATTGCCAAGGTTGATTTCTCAAACCTCACAACGGAGGAGTGGGTGAGAAGGGTCAACAGATATCATCCTAATGAGATACCCGACAACGTCAACATAAATGTCACCATCAACTGCTCCTGCGGAGACAGACACGTGTCAAAGGATTATGGTTTGTTTCTCACATACCCACTTCGCCCCGGTGACGACTTGCCGCGACTTGCGGCGGAATCCGGCGTGCAGGCGGAGCTGCTGCAGAGGTACAACCCTGCCTCGGATTTCACTGCCGGGAGTGGAATTGTGTTTGTGCCGGCCAAAGATGAAAATGGAAACTTTCCACCACTGCAGCTGGGAATAGGAATATCCGGTAGAGCCATTGCTGGCATTGCTGTTGGAGGGGCTGTTGGGATCTTATTGTTGGCACTTGCTATATATGTTGGGATATATAGAAGAAAGAAAGTGGATGAGGTAACCCTTCTCCCAGTCCCAGGAGCATCTGAAGATCAGTGTAGTCAACTCCAACATGGTTGTGGAAGCAGTGTGGACAAGGCATCAGAATCTTCTATTGTTGCTTCACCAAGGTTGACAGGTATTACAGTGGACAAGTCAGTGGAGTTCTCATATGAGGAGCTTGCCAAAGCTACTGATGGCTTTAGCACTGCTAATATAATTGGTCGAGGTGGCTTTGGATCTGTTTACTACGCTGAGCTTAGAAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAAAGAATTCCTTGCAGAACTAAAGGTTCTGACACATGTCCATCACTTGAACTTGGTGCGGTTAATAGGATATTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAGTACATTGAGAACGGCAATTTAAGTCAACATTTGCGTGTCTCAGGGAGGGATCCGTTATCATGGCCAGCTAGAGTTCAAATCGCCCTTGATGCAGCAAGAGGACTAGAATACATCCATGAGCATACAGTTCCTGTCTACATCCATCGAGATATCAAATCAGCCAACATTTTGATAGACAAAAATTTCCGTGGCAAGGTTGCAGATTTTGGTCTGACAAAACTGACTGAATATGGTAGTTCTTCATTACAAACACGTCTTGTGGGTACATTTGGTTATATGCCTCCAGAATATGCACAATATGGTGAAGTTTCCCCCAAAATAGATGTATATGCTTTTGGAGTTGTTCTCTATGAACTTGTATCTGGCAAGGAAGCTATTGTCAAGACAAACGAACCTGAGAACGAATCAAAAGGATTAGTTGCATTGGTTGTTTTTCCTGGCCTATCTTACCTCTTCAATAGTTGTAATTCATTTCATGTGTAG | 1650 | 0.437 | MTTQPNRKPLVLVLMFMLLIINRAQGRCWSGCNLALASYYLWEGTNLTYISKIFGKPISEILKYNPSVKIPDVIQSGTRINVPFSCECLNGEFLGHTFSYLTQHGNTYTIIAKVDFSNLTTEEWVRRVNRYHPNEIPDNVNINVTINCSCGDRHVSKDYGLFLTYPLRPGDDLPRLAAESGVQAELLQRYNPASDFTAGSGIVFVPAKDENGNFPPLQLGIGISGRAIAGIAVGGAVGILLLALAIYVGIYRRKKVDEVTLLPVPGASEDQCSQLQHGCGSSVDKASESSIVASPRLTGITVDKSVEFSYEELAKATDGFSTANIIGRGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRVSGRDPLSWPARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKIDVYAFGVVLYELVSGKEAIVKTNEPENESKGLVALVVFPGLSYLFNSCNSFHV. | 550 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca6g04427 | 549 | Pfam | Protein tyrosine and serine/threonine kinase | 323 | 517 | IPR001245 | GO:0004672|GO:0006468 | |
Seca6g04427 | 549 | ProSitePatterns | Protein kinases ATP-binding region signature. | 326 | 348 | IPR017441 | GO:0005524 | |
Seca6g04427 | 549 | SMART | serkin_6 | 320 | 548 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca6g04427 | 549 | FunFam | PTI1-like tyrosine-protein kinase 3 | 391 | 538 | - | - | |
Seca6g04427 | 549 | ProSiteProfiles | LysM domain profile. | 37 | 82 | IPR018392 | - | |
Seca6g04427 | 549 | Gene3D | Transferase(Phosphotransferase) domain 1 | 391 | 537 | - | - | |
Seca6g04427 | 549 | PANTHER | CHITIN ELICITOR RECEPTOR KINASE 1-RELATED | 10 | 532 | IPR044812 | GO:0019199|GO:0045087 | |
Seca6g04427 | 549 | SUPERFAMILY | Protein kinase-like (PK-like) | 300 | 528 | IPR011009 | - | |
Seca6g04427 | 549 | FunFam | LysM receptor kinase 2 | 299 | 390 | - | - | |
Seca6g04427 | 549 | ProSiteProfiles | Protein kinase domain profile. | 320 | 549 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca6g04427 | 549 | Gene3D | Phosphorylase Kinase; domain 1 | 301 | 390 | - | - | |
Seca6g04427 | 549 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 435 | 447 | IPR008271 | GO:0004672|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca6g04427 | Seca-Chr6 | 111857231 | 111865674 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca6g04427 | 9 | 531 | Receptor kinase-like Gene Family | AT3G21630 | 55.159 | 0.0 | 568 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LysM | Seca6g04427 | PK_Tyr_Ser-Thr | 3.7e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca6g04427 | - | K13429 | gmx:100802308 | 850.892 |