Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04423 ATGGAGGGTAGTAGTAGTTCTTACTTGATGGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCAATGATGATGATGCCTTTAGTGACTTCTAATCATCCCAATAATAATACTAATGCAAACACTAACACTAACACAAACTGTCTCTTCCTTCCCATCCCTTCCACTAATAATAATAATCACCACTCCAACACTGGAGCCCCTCCTTCTATCATGCTTCACAACAACACCACCACCAACCCTGCTGGCTTAGGGTATTATTTCATGGAGGACAACAACAACAACAATGGAAGCTCCTCCTCCTCTTCTTCTGCTGTTAAGGACAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCTGCCTATGTCAATTGTCAAAAGGTTGGAGCACCACCTGAAGTGGTGGCGAGGTTGGAAGAAGCGTGTGCATCTGCTGTGAGGTTGGCAGGTGATACAGTTGGATCAGGCTGCATAGGTGAAGATCCAGCTTTAGATCAGTTCATGGAGGCTTACTGTGAGATGCTCACTAAGTATGAGCAAGAACTTTCTAAACCCTTAAAGGAAGCCATGCTCTTCCTTCAGAGGATAGAGTGTCAGTTCAAAAATCTCACTATTTCTCCTTCCGATGTTGTAACTGAATTGATTCATATATATGATGGATCAGGTTGTAATGAGGGTACTGATAAGAATGGATCATCTGAAGAGGATGTTGATCTATACAACATCATAGATCCTCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGTAAGTACAGTGGATACTTGGGGAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGAAAGCTTCCTAAAGAAGCAAGGCAAAAACTTCTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCGCAGAAGGTGGCTCTGGCAGAGTCGACAGGTCTGGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGGTGGATCCAAGCCATCCACACTATTACATGGATCACAATGTTCTCACCAATCCCTTTCCCATGGATCTCCCCAACACCATGCTCTAG 1113 0.4412 MEGSSSSYLMAFGENSGGLCPMMMMPLVTSNHPNNNTNANTNTNTNCLFLPIPSTNNNNHHSNTGAPPSIMLHNNTTTNPAGLGYYFMEDNNNNNGSSSSSSSAVKDKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVRLAGDTVGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISPSDVVTELIHIYDGSGCNEGTDKNGSSEEDVDLYNIIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQKLLEWWSRHYKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMDHNVLTNPFPMDLPNTML. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04423 370 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677
Seca6g04423 370 Pfam ELK domain 251 272 IPR005539 GO:0003677
Seca6g04423 370 CDD homeodomain 283 335 IPR001356 GO:0003677
Seca6g04423 370 SUPERFAMILY Homeodomain-like 273 349 IPR009057 -
Seca6g04423 370 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Seca6g04423 370 SMART HOX_1 273 338 IPR001356 GO:0003677
Seca6g04423 370 FunFam Homeobox protein knotted-1-like 2 276 338 - -
Seca6g04423 370 Pfam KNOX2 domain 157 204 IPR005541 GO:0003677|GO:0005634
Seca6g04423 370 Gene3D - 276 338 - -
Seca6g04423 370 SMART KNOX2_2 154 205 IPR005541 GO:0003677|GO:0005634
Seca6g04423 370 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677|GO:0006355
Seca6g04423 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 340 - -
Seca6g04423 370 SMART ELK_2 251 272 IPR005539 GO:0003677
Seca6g04423 370 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677
Seca6g04423 370 Pfam KNOX1 domain 104 143 IPR005540 GO:0003677|GO:0005634
Seca6g04423 370 ProSitePatterns 'Homeobox' domain signature. 309 332 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04423 Seca-Chr6 111816123 111822322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04423 105 370 Homeobox Transcription Factor Family AT1G62360 76.119 7.29e-131 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca6g04423 KNOX2 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04423 - - gmx:100805837 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04423 6 111816123 111822322 Seca6g04423 6 111816123 111822322 ECH
Seca12g00150 12 1428142 1430053 Seca6g04423 6 111816123 111822322 PCT