Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04421 ATGAGTCAACTCGGTGTGATATTGCAGGAATCGGTGCGGACACAGAGGGAATCGAGAACGATTCTGGGTTTGTTGAGGGAGCAAATGGATGGTGTAGATGGAGGGTCTCGCAGGAGGCGTAGCTTCAAGGAACGGCTAGGATTCATTGGCATGGGTTGTTGTGGGGCCACCTGGGGTTTCCGTTCCGCCGCTCTAACCGTCAGGAATGGAGAACAACCACAGCAACAACAGCAGCTTCTGGAATCGGATCCTGGCCAGGATCCGAATGCGTCTGGACCCGATTGCGTGGGTCCGACTCCGGCGGGTTCGTCGAGCATGAATCTGGCGGCGGCGTTGGCGGCGGAGCGACAACTCCGGGGACCGCCGGAGGAACAGGGTGTGGGAGGTGGCAGAGCGCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTTCTGGAGGAGAAGGAGGGTGGGGACACGGCGGCGGAGGAGAAAGGAGGAGGGACGGTGGGGAATGATTCGGTGTGTTGCGTGTGCATGGGGAGGAATAAAGGGGCAGCATTCATACCATGTGGGCACACTTTTTGCAGGGTGTGTTCGAGGGAGCTGTGGCTGAATCGAGGGTCATGTCCCCTTTGCAATCGTTCCATCCTCGAGATTCTCGACATTTTCTAG 654 0.5872 MSQLGVILQESVRTQRESRTILGLLREQMDGVDGGSRRRRSFKERLGFIGMGCCGATWGFRSAALTVRNGEQPQQQQQLLESDPGQDPNASGPDCVGPTPAGSSSMNLAAALAAERQLRGPPEEQGVGGGRAPGTPWRVSLMRLLEEKEGGDTAAEEKGGGTVGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04421 217 MobiDBLite consensus disorder prediction 69 85 - -
Seca6g04421 217 SUPERFAMILY RING/U-box 164 214 - -
Seca6g04421 217 PANTHER OS01G0917900 PROTEIN 4 217 - -
Seca6g04421 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 216 IPR013083 -
Seca6g04421 217 SMART ring_2 169 206 IPR001841 -
Seca6g04421 217 ProSiteProfiles Zinc finger RING-type profile. 169 207 IPR001841 -
Seca6g04421 217 MobiDBLite consensus disorder prediction 69 102 - -
Seca6g04421 217 Pfam Zinc finger, C3HC4 type (RING finger) 166 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04421 Seca-Chr6 111773609 111774262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04421 21 217 C3H Transcription Factor Family AT4G22250 52.336 3.97e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04421 - - gmx:100804959 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04421 6 111773609 111774262 Seca6g04421 6 111773609 111774262 ECH