Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04419 ATGGGGAAATCGGGGGGTAGAAGAAAGAAGGGTGGCGGTTCAAGCAAAGCTCCAGTCGAGAATTCAGCAAATAATGGCAGTGTGGAACTGGATTCGTCAGCGTCATTGAAGAGAGCCCACGAGCTGAAAGAAGAGGGAAACGGAAGATTCCAGAATAAGGACTATGCGAGTGCTCTTCAACAATACGACAATGCTCTTCGTCTAACCCCCAAAAACCACCCGGACAGGGCCGTGTTTCACAGCAATAAGGCCGCGTGTTTGATGCAAATGAAGCCCATTGATCATGAAAGTGTCATTGCCGAATGCACCATGGCGCTTCAGGTCCAGCCCCAATTTGTTCGAGCCCTCCTTCGAAGGGCACGCGCGTACGAGAGCGTAGGCAACAACGAAATGGCGCTGCGAGACGTAAAAGCCTTGCTGGCAGCTGAACCTACTCACTCCGATGCTTTGGAGATTGCTCACAGATTGAGAACCGCATTGGAACCTCGCCCTTCCCCTGCTGCACTCGGCGTTTCCGCCGTTCGTGGTAACCCTATTTCGGGCTTAGGCCCAAGCCCAAAGAAGGCCCAGCCCGAGACTAAGCCCCAATTGCCAAAGCCCTCAAATGTAGCAAGAAAAGAAGAGGTTGAGATTCGGTCTAGGCCGTTGAAGCTTGTTTATGATCATGACATCAGGCTTGCCCAGATGCCAATGAATTGCAGTTTTAGGGCACTGAGAGACACAGTAAGAAAAAAATTCCCATCTTCTAATTCAGTTCTGATAAAGTATAAGGATAATGACGGTGATTTGGTGACTATAACCTCCACTGATGAACTCAGAATGGCTGAGTCTAGTGTTGATACCCTAAGCGATTCAATTGGGATGCTGAGACTTAATATAGTTGAAGTTAATTCTGAGCAGGAGCCACCTATATTGGAAGAACAAGAACAAAAACCTGTTGAGAGTGGTTCTATTTCTAATGATATTGATACCAAGGTTGTTAAGGTGGAGAAAGATACTACTAAGGAAGATACTGAATCCAAGGAAATAGAGATGGATGATTGGATGTTTGAATTTGCTCAGTTTTTCCGTTCTCGTGTTGGCATTGATGGGGATGCTCATGTTGACTTGCATGAGCTTGGGGTGGAGTTTTGTTCAGAGGCACTTGAGGAATTGGTAACTGGTGAGGAGGCTCAGGGTCTCTTTGATAAAGCTGCTTTGAAGTTTCAGGAAGTGGCTGCATTGGCATTTTTCAATTGGGGAAATGTGCACATGTGTGCTGCTAGGAAGCGTGTGCCTTTAGAAGGGAAGGAGAAGGAGGTAGTTGCAGAAGGGCTTCAAGTTGCTTTTGATTGGGTTAAGGAAAAATATTGTTTGGCAAGAGAGAAGTATGAGCAAGCACTCTTGATTAAACCAGACTTTCATGAGGGATTATTGGCTTTAGGGCAGCAACAATTTGAATTGGCTAAGCTTCATTGGTCTTTTGTGCTTGCTAAGAAGATAGATTTATCAGGCTGGGATTCCAGGGAGACACTTCAGCTTTTTGACAGTGCAGAGCAGAAGATGAAAGGTGCAACTGAGATGTGGGAGAAGCTGGAAGAACAGAAAGTAAATGAGCTAAAGGACCCGAAGAAAGAAGAACTACTGAGAAGAAAGAAAAAACAGGGAGATGAATCCTCTGGTGTTGGGGGTCAGGATGATGGTGTATCTGCAGAAGAAGCTGCACAGCATGCAGCTGTGATGAGATCGCAGATTCATCTTTTCTGGGGTAATTTATTGTTTGAACGATCCCAAGTAGAATGCAAATTGGGAATGGCTGATTGGAAGAAAAACCTGGATGCTGCTATTGTGCATTTTAAGCTTGCTGGAGCTTCAGAGGCCGATGTTTCAATGGTTCTAAAGAATCATTGCTCTAATGGAGAAGTAAAAGGATCAAGAACCCACAACACAATTACGCTAGTAGAATAG 1947 0.4535 MGKSGGRRKKGGGSSKAPVENSANNGSVELDSSASLKRAHELKEEGNGRFQNKDYASALQQYDNALRLTPKNHPDRAVFHSNKAACLMQMKPIDHESVIAECTMALQVQPQFVRALLRRARAYESVGNNEMALRDVKALLAAEPTHSDALEIAHRLRTALEPRPSPAALGVSAVRGNPISGLGPSPKKAQPETKPQLPKPSNVARKEEVEIRSRPLKLVYDHDIRLAQMPMNCSFRALRDTVRKKFPSSNSVLIKYKDNDGDLVTITSTDELRMAESSVDTLSDSIGMLRLNIVEVNSEQEPPILEEQEQKPVESGSISNDIDTKVVKVEKDTTKEDTESKEIEMDDWMFEFAQFFRSRVGIDGDAHVDLHELGVEFCSEALEELVTGEEAQGLFDKAALKFQEVAALAFFNWGNVHMCAARKRVPLEGKEKEVVAEGLQVAFDWVKEKYCLAREKYEQALLIKPDFHEGLLALGQQQFELAKLHWSFVLAKKIDLSGWDSRETLQLFDSAEQKMKGATEMWEKLEEQKVNELKDPKKEELLRRKKKQGDESSGVGGQDDGVSAEEAAQHAAVMRSQIHLFWGNLLFERSQVECKLGMADWKKNLDAAIVHFKLAGASEADVSMVLKNHCSNGEVKGSRTHNTITLVE. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04419 648 PANTHER PROTEIN CLMP1 1 636 IPR044517 -
Seca6g04419 648 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
Seca6g04419 648 Gene3D Tetratricopeptide repeat domain 36 161 IPR011990 GO:0005515
Seca6g04419 648 CDD PB1 216 293 - -
Seca6g04419 648 SMART tpr_5 77 112 IPR019734 GO:0005515
Seca6g04419 648 SMART tpr_5 113 146 IPR019734 GO:0005515
Seca6g04419 648 SMART tpr_5 39 72 IPR019734 GO:0005515
Seca6g04419 648 SMART PB1_new 213 296 IPR000270 GO:0005515
Seca6g04419 648 ProSiteProfiles PB1 domain profile. 213 296 IPR000270 GO:0005515
Seca6g04419 648 MobiDBLite consensus disorder prediction 167 206 - -
Seca6g04419 648 MobiDBLite consensus disorder prediction 536 553 - -
Seca6g04419 648 MobiDBLite consensus disorder prediction 1 36 - -
Seca6g04419 648 MobiDBLite consensus disorder prediction 536 566 - -
Seca6g04419 648 SUPERFAMILY CAD & PB1 domains 214 302 - -
Seca6g04419 648 Gene3D - 213 292 - -
Seca6g04419 648 MobiDBLite consensus disorder prediction 17 32 - -
Seca6g04419 648 Coils Coil 508 528 - -
Seca6g04419 648 Pfam PB1 domain 214 295 IPR000270 GO:0005515
Seca6g04419 648 SUPERFAMILY TPR-like 39 485 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04419 Seca-Chr6 111740232 111742178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04419 27 160 Calmodulin-binding Proteins AT3G25230 25.517 5.39e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04419 K26538 - gmx:100786963 859.751