LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g04392	ATGATGCCGAAGGGCAACAGCATGGTGATGCAGTGTTCGGGAGAAGATACCGTGAAATCGGTTCACGAAAGGATCGAGAAGATGATCAGCATTCCGGTTTGCCAGCAGAGGCTAATATACGAAGGGAAGCAACTCCACTGGGAGCAGAGTCTTGACGAATGCGGCATCCAAAACGACGCGAATCTTCAATTGATTGGGCACTTGCGTAGTGGTGGTTGCCCTCAAGTGTGGTACGACATTGAAGAAATTGATTCCCTCATTTGCGGTTTATGCAGAGGCGAAGGGGCGCCCGAAGCTTCGAAGATCGTCGTCGATCTCAACAAGTACGTGATCAACTTCTTTTATGCTTTCATGTCCTCCAACATTCCCTCAGCGTTGGTCATGCTCTATGTGTCCCCTTACGAAGGTAACAAGGACCTTGCTGATACTGTTATTAGAAAATTTTTTAGCAGTTGCTGTGCTAGCTCATCTAAAGAGTTGAAGTTTCGTTCCCTTTCTATGGTGTTGGAGATTTGTAGACTGCTTAGACATGTGGTGGAGTGTTTTGATTCTTTGTATATCGCTTGCCGTGGTTATTTCAGGATATTGTTTGAGGCTGCTGGTGATCGTTGCTTTGACATTAGGAATTTCCATCAAGATATGTTCCCCTTTGTTTCTGAGCTTGCTGATTGTATTTTGAGGGATTTGGAGTTGAGTATATTTTGCCCCACCGGCATATTGCCGAGGGGGAACCATTTTCAGGATTTCACAGTTTTGTTAGCCCCTTTAAGGAATGAAATCAGAAAGCGGCAAGCTTTGAAGGGTTCTGTGACTGATGAAAATTGCCATGAGGAGCACCCTTTGTTTGAAAGGGAGGCTGATCACATTCGAATTATATATATTAAGTTACTGATCACAATGGATGACTGCCTTGGGGCCCTGGAGCATTGCTTGGCTGAGGAGGAAGAAGAGGGCTATTGGGGGTGGTCTTGGTATCTTTCCATGTTGAAGGAATTGTATCATATCTCTAAGCTCTATGATGGCACCGAAGACATGTTTTGGAGAGTCTTGATGCGTCGAAGAAGTATGCTGTCTCTATTAGTTGTTTGGAATGCAGGTAGAACCAATGATCATCGGTGGGTTCTAGAGAACAAAAGTGTGACCAAATTTGAATCTAGGAGGCATTTGGCGATGATACTCTTCTCTGACATGAGAAAAGACCATGGGAGGTTGCATCATATGCTTATTGACAGGTCTGAATTGTTGGCTGAATCTTTCCGGTGCATAGCAATGCCTAAATCTCTGCATGCTGATCTGTTTGTGGAATTCAAGAATGAGGAAGCTACAGGAGCGGGTGTACTGAGGGAGTGGTTTGTTTTGGTGTGTCAAGCAATATTTAATCCACTAAATGCTCTTTTTGAGGCATGCCCAAATGATTGCCGGAGATTTTTCCCTAATCCTGCATCTAAGGTAAATCCTCTGCACCTTGAGTACTTCAGCTTCTCTGGTCGTATTATTGCATTGGCTTTGAAGAATAAAGTACAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCATGCAATTGGCTGGAAACTTTATTACTTTAGAAGATATAAAAGAAGCAGATCCTTACTTTTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTAATTTCATTGATTCAGATGCATTAGGACTGACGTTTGTTAGAGAGGTGGAGGAATTTGGTTACAGGAAAGTGATTGAGCTTTGCCCTGGTGGGAATACTCTTGTAGTGAATAGTAAGAACAGGGAAAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAGGGTTTTTGTGATATTCTTTCAAACTCAAGTCTCCAGCAGTTCTTTCAAAGTTTAGAGCTTGAAGATCTTGATTGGATGCTGTATGGGAGTGAAAAGGCCATCTCTGTTAGAGATTGGAGGGCACATACTGAGTATATTGGCTATAAAGAGACTGATTGTCAGATATCTTGGTTTTGGAAGATTGTTCGGAGAATGTCTGCAAAACAAAGGAAGGCACTTCTGTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGCATTCTCATGTATGCATTTTGAGATCTCATGAACCTGATCGTCACCTTCCCTCATCTCAGACATGCTTTTACCAGCTGTGTCTTCCCCCGTATTCATCTATGGTTGTCATGCAAGATCGCCTTGGAATCATTACTCAAAAACACCTTGGTTTCAGTTTTGGTATTCAGTGA	2292	0.4232	MMPKGNSMVMQCSGEDTVKSVHERIEKMISIPVCQQRLIYEGKQLHWEQSLDECGIQNDANLQLIGHLRSGGCPQVWYDIEEIDSLICGLCRGEGAPEASKIVVDLNKYVINFFYAFMSSNIPSALVMLYVSPYEGNKDLADTVIRKFFSSCCASSSKELKFRSLSMVLEICRLLRHVVECFDSLYIACRGYFRILFEAAGDRCFDIRNFHQDMFPFVSELADCILRDLELSIFCPTGILPRGNHFQDFTVLLAPLRNEIRKRQALKGSVTDENCHEEHPLFEREADHIRIIYIKLLITMDDCLGALEHCLAEEEEEGYWGWSWYLSMLKELYHISKLYDGTEDMFWRVLMRRRSMLSLLVVWNAGRTNDHRWVLENKSVTKFESRRHLAMILFSDMRKDHGRLHHMLIDRSELLAESFRCIAMPKSLHADLFVEFKNEEATGAGVLREWFVLVCQAIFNPLNALFEACPNDCRRFFPNPASKVNPLHLEYFSFSGRIIALALKNKVQVGIVFDRVFFMQLAGNFITLEDIKEADPYFYSSCKQILEMDANFIDSDALGLTFVREVEEFGYRKVIELCPGGNTLVVNSKNREKYVDLLIQNRFVTSISEQVSHFAKGFCDILSNSSLQQFFQSLELEDLDWMLYGSEKAISVRDWRAHTEYIGYKETDCQISWFWKIVRRMSAKQRKALLFFWTSVKYLPVEGFRGLHSHVCILRSHEPDRHLPSSQTCFYQLCLPPYSSMVVMQDRLGIITQKHLGFSFGIQ.	764

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g04392	763	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	8	754	-	-
	Seca6g04392	763	SUPERFAMILY	Ubiquitin-like	3	72	IPR029071	-
	Seca6g04392	763	Gene3D	Hect, E3 ligase catalytic domains	408	638	-	-
	Seca6g04392	763	Gene3D	Hect, E3 ligase catalytic domain	646	760	-	-
	Seca6g04392	763	ProSiteProfiles	Ubiquitin domain profile.	1	71	IPR000626	GO:0005515
	Seca6g04392	763	Gene3D	-	1	72	-	-
	Seca6g04392	763	Pfam	HECT-domain (ubiquitin-transferase)	453	759	IPR000569	GO:0004842
	Seca6g04392	763	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	524	606	-	-
	Seca6g04392	763	Gene3D	Hect, E3 ligase catalytic domain	524	606	-	-
	Seca6g04392	763	SMART	hect_3	422	761	IPR000569	GO:0004842
	Seca6g04392	763	Pfam	Ubiquitin family	4	68	IPR000626	GO:0005515
	Seca6g04392	763	FunFam	E3 ubiquitin-protein ligase UPL5	647	762	-	-
	Seca6g04392	763	ProSiteProfiles	HECT domain profile.	424	761	IPR000569	GO:0004842
	Seca6g04392	763	SUPERFAMILY	Hect, E3 ligase catalytic domain	389	748	IPR035983	GO:0004842
	Seca6g04392	763	SMART	ubq_7	2	67	IPR000626	GO:0005515
	Seca6g04392	763	PRINTS	Ubiquitin signature	48	69	IPR019956	-
	Seca6g04392	763	PRINTS	Ubiquitin signature	27	47	IPR019956	-
	Seca6g04392	763	PRINTS	Ubiquitin signature	6	26	IPR019956	-
	Seca6g04392	763	CDD	HECTc	405	759	IPR000569	GO:0004842

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g04392	Seca-Chr6	111528165	111532679	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g04392	5	99	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	31.633	6.47e-08	50.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g04392	-		-	gmx:100796470	902.508