Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g04391 | ATGATGCCGAAGGGCAACAGCGTGGTGATGCAGTGTTCGGGAGAAGAGACCGTGAAATCGGTTCACGAAAGGATCGAGAGGATGACCGGAATTCCTGTTCGCGAGCAGAGGCTAATATACGAAGGGAAGCAACTCCGTTGTGAGCAGAGTCTGCGCGAGTGCGGCATTCAAAAAGACGCGAATCTCCAATTGGTTGGGCACTTACGCAGTGGGGAGCACCCACCTTCATGTTCATGGCATGATGACGCTAACCTTCATAGATTTCTTCAGTTATTGAGCAAAACGGATAAGTGCCTTCATACCTTGGAGAATTGCTTTGCTAACAAGGAGCCGTGGGAAGGGGATGAGGATGTTGCCAATACGTGTTCGATGTTACTTATCATCCTGAAGGATTTGCATGAAATCTCTAAGCACTATGATGGCGCAGAAGACAAGTTTTGGAGTGTTTTGATGCATCGAAGAAGTTTGCTGTCTTTATTAATTGTTCGGTTTGCAAAGAGAACCGATGATAATCAGTGGGTTTTTGAGAAAAAATGTGTGACCGATTTTGAATGTAGGAGGCATTTGGCGATGATGCTCTTCCCTGATGTAGAAGAAGACTTTGAGGATTTGCATGAGATGCTTATTGACAGGTCTCAGTTGTTGGCTGAATCTTTCGAGTACATAGCAGAAGCGGAGCCTGAATCTCTGCACACTGGTCTTTTTATTAAATTCAAGAATGAGGATGCTTCAGGACCGGGTGTACTGAGGGAGTGGTTTTTTTTGGTGTGTCAAGCATTATTTAATCCGCTAAATGCTCTTTTTGAGGCATGCCCAAATGACCGCAGGAGATTTTTCCCAAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCTGTGGTCGTATTATTGCATTGGCTTTGATGAATAAGGTGCAAGTGGGTATTGCTTTTGATCGTGTGTTTTTCATGCAATTGGCTGGAAACTGTATTACTTTGGAAGACATACAAGATGCAGATCCTTACTTGTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTAATTTCATTGATTCAGATGCATTAGGACTGACGTTTGCTAGAGAGGTGGAGGAATTTGGATACATGAAAGTGATTGAGCTTTGCCCTGGTGGGAAAACTCTTGTAGTGAATAGTAAGAACAGGGAAAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAGGGTTTCTGTGATATTCTTTCAAACTCAAGTCTCCAGCAGTTCTTTCAAAATTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAGAAGGCGATCTCTGTTAAAGATTGGAGGGAACATACTGAGTATATTGGCTATAAAGAGACTGATCGTCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCAGAACAAAGGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCCATGGTTTGGCTTCCCGTCTTTTCATTTCCAGATCTGCAGAACCTGATGATCGCCTGCCCTCATCTCACACATGCTTTTACAGGCTGTGTATCCCTCCGTATTCATCTAAGGCTGTTATGCAAGATCGTCTTGGAGTCATCACTCATGAACACATTGGTTGCAGTTTTGGGACTTGTTGA | 1698 | 0.4293 | MMPKGNSVVMQCSGEETVKSVHERIERMTGIPVREQRLIYEGKQLRCEQSLRECGIQKDANLQLVGHLRSGEHPPSCSWHDDANLHRFLQLLSKTDKCLHTLENCFANKEPWEGDEDVANTCSMLLIILKDLHEISKHYDGAEDKFWSVLMHRRSLLSLLIVRFAKRTDDNQWVFEKKCVTDFECRRHLAMMLFPDVEEDFEDLHEMLIDRSQLLAESFEYIAEAEPESLHTGLFIKFKNEDASGPGVLREWFFLVCQALFNPLNALFEACPNDRRRFFPNPASKVHPLHLEYFSFCGRIIALALMNKVQVGIAFDRVFFMQLAGNCITLEDIQDADPYLYSSCKQILEMDANFIDSDALGLTFAREVEEFGYMKVIELCPGGKTLVVNSKNREKYVDLLIQNRFVTSISEQVSHFAKGFCDILSNSSLQQFFQNLELEDLDWMLHGSEKAISVKDWREHTEYIGYKETDRQISWFWEIVGRMSAEQRKVLLFFWTSVKYLPVEGFHGLASRLFISRSAEPDDRLPSSHTCFYRLCIPPYSSKAVMQDRLGVITHEHIGCSFGTC. | 566 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g04391 | 565 | PRINTS | Ubiquitin signature | 27 | 47 | IPR019956 | - | |
| Seca6g04391 | 565 | PRINTS | Ubiquitin signature | 6 | 26 | IPR019956 | - | |
| Seca6g04391 | 565 | PRINTS | Ubiquitin signature | 48 | 69 | IPR019956 | - | |
| Seca6g04391 | 565 | Gene3D | Hect, E3 ligase catalytic domain | 326 | 408 | - | - | |
| Seca6g04391 | 565 | Pfam | HECT-domain (ubiquitin-transferase) | 255 | 556 | IPR000569 | GO:0004842 | |
| Seca6g04391 | 565 | Gene3D | Hect, E3 ligase catalytic domains | 208 | 440 | - | - | |
| Seca6g04391 | 565 | FunFam | E3 ubiquitin-protein ligase UPL5 isoform A | 326 | 408 | - | - | |
| Seca6g04391 | 565 | ProSiteProfiles | HECT domain profile. | 226 | 565 | IPR000569 | GO:0004842 | |
| Seca6g04391 | 565 | SMART | ubq_7 | 2 | 67 | IPR000626 | GO:0005515 | |
| Seca6g04391 | 565 | FunFam | E3 ubiquitin-protein ligase UPL5 | 449 | 564 | - | - | |
| Seca6g04391 | 565 | CDD | HECTc | 205 | 563 | IPR000569 | GO:0004842 | |
| Seca6g04391 | 565 | PANTHER | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE | 123 | 563 | - | - | |
| Seca6g04391 | 565 | SMART | hect_3 | 224 | 563 | IPR000569 | GO:0004842 | |
| Seca6g04391 | 565 | Gene3D | - | 1 | 73 | - | - | |
| Seca6g04391 | 565 | Pfam | Ubiquitin family | 4 | 69 | IPR000626 | GO:0005515 | |
| Seca6g04391 | 565 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 71 | IPR000626 | GO:0005515 | |
| Seca6g04391 | 565 | SUPERFAMILY | Hect, E3 ligase catalytic domain | 201 | 550 | IPR035983 | GO:0004842 | |
| Seca6g04391 | 565 | SUPERFAMILY | Ubiquitin-like | 3 | 78 | IPR029071 | - | |
| Seca6g04391 | 565 | Gene3D | Hect, E3 ligase catalytic domain | 448 | 564 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g04391 | Seca-Chr6 | 111520123 | 111524629 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca6g04391 | 5 | 76 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 37.500 | 8.22e-10 | 55.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g04391 | - | - | gmx:100789233 | 751.125 |