Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04377 ATGGTTTCGCTGGAGGATTCTCGCTCGAATTCGAGCCGTTTCCCCTTAACGCGAACCTATCAGTATCAGTCCTCCCTTTCCTCCAAAACGCAGCGTCACATCGGAAGGTCCATGCGCACTATACGCTCCAATTTCTTCCAAGATGACAACAGCAGCACCTGCTCCTTCACCGAGAAATCCACGTGTCTATCGGAAAACCTTACCGACTCCGTCGTCGACCTCCGCCTCGTCGACCTCGCTTCTCGGAACAATAAATCCGTCAAGTCCTCCGGCGCCTCCGAGGAGGACCTCCTCGATCTCTCCCAGGCCTTCAGCGATTTCTCCGCCTGCAGCAGCGACATCTCCGGCGAGCTGCAGCGTCTGGCGAGCCTGCCTTCGCCGGAATACGTTCAGAAGAGTGACGCTGGCGGAGAGGCCGAGAAGGAGCCCGAGCCAGAGCCAGAGCCTTGCATGGGGTTCCTCCAGAGGGAGAACTTCTCCACGGAGATTATTGAGAGTATCTCGCCGGAGGATCTTCAGCCGACGGTGAAGCTTTGCATTGACGGGCTTCAGTCGCCGTCGGTGGCCGTGAAGCGATCGGCTGCGGCGAAGCTGAGGCTTCTGGCGAAGAATCGCGCTGATAACAGAGTTCTGATCGGCGAGTCCGGTGCGGTCGCTGTTCTGGTTCCTCTGCTTCGCTGCAGCGATCCGTGGACGCAGGAGCACGCAGTGACGGCGCTGCTGAACCTGTCACTTCACGAGGATAACAAGAAGCTGATAACCAATGCGGGAGCCGTGAAGTCGCTGATTTATGTGCTGAAGACAGGGACGGAGACTTCGAAGCAGAACGCGGCGTGCGCGTTGCTGAGTCTTGCGTTGGTGGAAGAGAACAAGAGCTCGATCGGCGCTTCGGGGGCGATACCACCACTGGTTTCTCTGCTGTTGAACGGTTCCAACAGGGGGAAGAAGGACGCGCTTACGACGCTCTATAAGCTGTGCTCCGTGAAGCAGAACAAAGAGAGGGCGGTGAGCGCCGGTGCTGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGCAAGGGAACGGCATGGCGGAGAAGGCAATGGTAGTGCTCAACAGCTTAGCAGGGATTCAGGAAGGGAAAGATGCGATTGTGGAAGAAGGTGGAATAGCTGCTCTTGTGGAAGCCATTGAGGATGGTTCTGTGAAGGGAAAGGAGTTTGCTGTTTTGACGCTTCTGCAACTGTGTGCTGACAGTGTCAGAAACAGAGGGTTTCTCGTGAGAGAGGGTGGGATTCCTCCTCTTGTTGCTCTTTCCCAAACTGGGACCCCTCGAGCTAAGCACAAGGCTGAAACGCTACTTCGATATTTGAGAGAATCAAGACAAGAAGCATCATCATCAAGTTCTTAG 1386 0.5613 MVSLEDSRSNSSRFPLTRTYQYQSSLSSKTQRHIGRSMRTIRSNFFQDDNSSTCSFTEKSTCLSENLTDSVVDLRLVDLASRNNKSVKSSGASEEDLLDLSQAFSDFSACSSDISGELQRLASLPSPEYVQKSDAGGEAEKEPEPEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSPSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVAVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGAVKPLVELVAEQGNGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADSVRNRGFLVREGGIPPLVALSQTGTPRAKHKAETLLRYLRESRQEASSSSS. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04377 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 216 258 IPR000225 GO:0005515
Seca6g04377 461 Gene3D - 316 460 IPR011989 -
Seca6g04377 461 PANTHER U BOX DOMAIN-CONTAINING 123 450 - -
Seca6g04377 461 MobiDBLite consensus disorder prediction 125 149 - -
Seca6g04377 461 FunFam U-box domain-containing protein 4 162 314 - -
Seca6g04377 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 339 381 IPR000225 GO:0005515
Seca6g04377 461 Pfam Armadillo/beta-catenin-like repeat 289 327 IPR000225 GO:0005515
Seca6g04377 461 Pfam Armadillo/beta-catenin-like repeat 207 244 IPR000225 GO:0005515
Seca6g04377 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 298 340 IPR000225 GO:0005515
Seca6g04377 461 SUPERFAMILY ARM repeat 173 450 IPR016024 -
Seca6g04377 461 Gene3D - 157 315 IPR011989 -
Seca6g04377 461 SMART arm_5 369 409 IPR000225 GO:0005515
Seca6g04377 461 SMART arm_5 411 451 IPR000225 GO:0005515
Seca6g04377 461 SMART arm_5 328 368 IPR000225 GO:0005515
Seca6g04377 461 SMART arm_5 246 286 IPR000225 GO:0005515
Seca6g04377 461 SMART arm_5 205 245 IPR000225 GO:0005515
Seca6g04377 461 SMART arm_5 287 327 IPR000225 GO:0005515
Seca6g04377 461 FunFam U-box domain-containing protein 4 315 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04377 Seca-Chr6 111361076 111364679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04377 153 454 U-box Gene Family AT2G23140 49.032 4.20e-87 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04377 - - gmx:100818658 753.436