Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04375 ATGTCAATGGACCCTGGAAAGCTTTTCATTGGCGGTATTTCCTGGGACACAAATGAAGACCGACTCAGACAGTATTTCCAGAGCTTTGGAGATGTAGTTGAAGCTGTGATAATGAAGGATCGCAACACGGGGCGTGCCCGTGGTTTTGGATTTGTTGTTTTTGCTGATCCTTCTATTGCTGAGCGAGTTGTTATGGAAAAACATGTCATTGATGGTAGAACTGTTGAAGCAAAAAAGGCTGTCCCTAGAGATGATCAGAATGTTCTGAATAGAAGCAACAGTAGCAGTCACGGGTCGCCTGGTCCTACTGCTACTCCTACCCGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCCACAGTTACTGAGAGTGATTTTAAGAAGTACTTTGATCAATTTGGAACAATTACGGATGTTGTTGTGATGTATGACCATAACACCCAAAGGCCTAGAGGTTTTGGATTCATCACGTTTGATTCTGAGGAAGGAGTTGAGAAAGTGTTGCACAAAACTTTTCATGAACTAAATGGTAAAATGGTCGAGGTTAAGAGGGCTGTTCCAAAGGAATTATCTCCAGGTCCAAATAGAGGCCAGTTAGGTGGATATAGTTATGGTATGAGTAGAGTTAGTAGCTTTCCTAATGGTTGCATTCAGGGATATAATCCAAGCTTGGTCGGAGGTCATGGACTTAGAATAGATGGTAGATTGAGTCCTGTTTCTGTTGGCCGTAGTGGATATCCTCTTTTGGGTCCTAGTTACGGGACAGAACTCAACTTTGAGCCACCATTGAGCCAAAATGAAAATGCAAACTTTACATCTAACTTTGTCATAGGACGGGCATTGAACTCTTCATACAGTGGAAGTCCGAGCAGATACAGTAATGGTATGGGGTATGTTGGTTCAAGTGTTGGCAACAATTCAACCATAAGTTCAACAAATCAGAATTTGTGGGGGAATGGTCTTAACTATGCTACTAACCCTGCAAGCTCTGATGCATTTGTAGGTTATGGAAGTGAAAATTCAAACATGGGTTCTTTTGGTAGTATTGGATCACTTTGGAGTTCCTCCCTTGGCTCTAATCCAGCTGGAACTATAGGCTCTGGATATAGTAAAGGCAGTCTTAGTTATAGGTCTGGAGATGTGAATTTAGGGTCAAAGACAGTAGGTTATGGAAAAAGCAGTGAAAGCATTGTTGCATCAGCTTCATCATATGGTTTGTCAAATGGCAGTTATGATGAGGCATACAAAGATACTTACAAAGCTGGGTCATTTTATCAGGACAATACTTGGAGATCATCAGCTTCAGAACTAGAAGGTTCTGGTTCTCTTGGTTTTGGCTTTGAAAATGCTGTTTCAGATTTAATGAGCAAAAGCTCTGGTGGCCACATTGGAGCTTATACTGTTGCTAATAGACAACCAAATAGAGGTAAAATGTGTTTCCCTTTTATTATCATTTGA 1458 0.4115 MSMDPGKLFIGGISWDTNEDRLRQYFQSFGDVVEAVIMKDRNTGRARGFGFVVFADPSIAERVVMEKHVIDGRTVEAKKAVPRDDQNVLNRSNSSSHGSPGPTATPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLHKTFHELNGKMVEVKRAVPKELSPGPNRGQLGGYSYGMSRVSSFPNGCIQGYNPSLVGGHGLRIDGRLSPVSVGRSGYPLLGPSYGTELNFEPPLSQNENANFTSNFVIGRALNSSYSGSPSRYSNGMGYVGSSVGNNSTISSTNQNLWGNGLNYATNPASSDAFVGYGSENSNMGSFGSIGSLWSSSLGSNPAGTIGSGYSKGSLSYRSGDVNLGSKTVGYGKSSESIVASASSYGLSNGSYDEAYKDTYKAGSFYQDNTWRSSASELEGSGSLGFGFENAVSDLMSKSSGGHIGAYTVANRQPNRGKMCFPFIII. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04375 485 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Seca6g04375 485 SUPERFAMILY RNA-binding domain, RBD 4 100 IPR035979 GO:0003676
Seca6g04375 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Seca6g04375 485 Gene3D - 107 194 IPR012677 -
Seca6g04375 485 SMART rrm1_1 7 78 IPR000504 GO:0003723
Seca6g04375 485 SMART rrm1_1 111 183 IPR000504 GO:0003723
Seca6g04375 485 CDD RRM2_Hrp1p 111 188 - -
Seca6g04375 485 MobiDBLite consensus disorder prediction 80 109 - -
Seca6g04375 485 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Seca6g04375 485 Gene3D - 5 88 IPR012677 -
Seca6g04375 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Seca6g04375 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 170 IPR000504 GO:0003723
Seca6g04375 485 FunFam Heterogeneous nuclear ribonucleoprotein 1 107 194 - -
Seca6g04375 485 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Seca6g04375 485 SUPERFAMILY RNA-binding domain, RBD 105 208 IPR035979 GO:0003676
Seca6g04375 485 MobiDBLite consensus disorder prediction 86 106 - -
Seca6g04375 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04375 Seca-Chr6 111348752 111352999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04375 8 189 Eukaryotic Initiation Factors Gene Family AT2G36660 32.642 1.04e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04375 K14411 - cave:132171089 637.876