Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04373 ATGCAAACGTCCCAGAAACACCCCACTTCAGCTGGTATCCATTTGTACCACCAGCAGCCTATGCAAGACATTGATCCCTACACTCAATACCAAATATTACAAAGCAGTGCATGCCATGACAGTAGCAGCCAGGGAACCAATGTTTCTTTTGAAGCCTGCAAGGAGCAATACTTCACCCTGGAATCATCCACAGGAACCACTGGTCTAGGTTGTGATTCTCCTTCCTATGCTAGTGTATCATCCAACAGAGGTCCTTTTTCTCCACAAGCTTCTCATTCTTACCATTCAGATCAGCATCAGTCATCTGACAACACCTATGGATCACCAATAAGTGTACACTCTAGTGCTGATGATAGCTATGAGTTGAAGCACAAACTTAGAGAACTTGAGATTTCATTGTTGGGGCCTGAGTCAGATATTGTTGACAGCTGTAACGGCTGCATCAAGGGTGGCCTCCACGGAGCATCTTCAACAGCTAAATATAATTGGTCTCAGATTGAAGAAATGATTCCAAAGTTAGACTTGAGAGAAGTCCTTATTCGGTGTGCACAAGCTGTGTCAGATGGTGATGTTCAAACAGCACTAGGATGGATGGATAATATATTGGGAAAGATGGTATCAGTTGCTGGGGATCCTATCCAAAGGTTAGGTGCTTACATGTTGGAGGGTCTAAGAGCAAGGTTGGAATCATCAGGGAGTTTAATCTACAAGGCCTTGAAGTGTGAACAACCAACAAGCAAGGAACTCATGAGTTACATGCACATCATGTATCAGGTTTGCCCATATTGGAAGTTTGCTTATGTATCTGCAAATGCTGTCATTGGAGAGGCAATGCAAAATGAATCCAGAATTCATATAATAGACTTCCAAATTGCACAGGGCACACAGTGGTTGTTACTTATGCAGGCTCTTGCATGTAGGCCAGGTGGACCTCCATTCATTCGTGTAACTGGTGTTGATGATTCACAATCATTTCATGCTAGGGGTGGAGGACTTCATATTGTAGGAAAAAGGCTCTCAGATTATGCCAAGTCTTGTGGGGTGCCATTTGAGTTCCACATTGCTGGCATGTCTGGCTGTGAGGTTGAACTAGAAAACCTTGTAGTTATGCCTGGGGAAGCTCTAGCTGTGAATTTCCCTTTCATTTTGCACCACATGCCAGATGAGAGTGTGAGCACAGAGAACCATAGAGACAGGCTATTGAGATTGGTAAAGAGTTTGTCACCCAAGGTTGTGACCCTTGTTGAGCAAGAATCCAACACCAACACTTCACCATTTTTCCAAAGGTTTGTTGAGACTTTGGATTACTACACTGCTATGTTTGAATCAATAGATGTGGCCGTCCCCAGAGATGACAAGAAGAGGATTAGTGCAGAACAGAACTGTGTGGCTCGTGACATTGTCAACATGATAGCTTGTGAAGGGGCTGAGAGAGTGGAAAGGCATGAACTTTTTGGAAAATGGAGGTCAAGATTTTTAATGGCTGGTTTTGTACCATGCCCTTTGAGTTCTTCAGTGATGGGTTCAGTTAGGAATCTCTTGAAAGAATTCAATGAAAATTATAGGGTTGAACACACAGATGAGAGAGCAGATTTGCGGAGAATGCAGAGGGAACAAGAGAGGGAGAGAAGGCGCATACGTGACAGACAGAGAAGACAATCCATGACGCAAGAACAAAGAGAAAGACACCTTGCTAGACGCAGAAGAAACTACCAACTCCGAAGACAAAGAGCTGCAAATGCTAATGTTCATGCTCCATTCATTCCTCCTCTTCCTAACCCTCATGGTGTAGAATTAAGTGCAGGTGAAGCCAGTACTAGTGATGAGCTTCAAGGGGTCACTTCTTCTACCTCACTAGACTACAGAGTCCTCTGTCATGGTATTGGTCTCCCTCATCATGGCCTCAATCAAGGACAAGAAACATTGAATTTGGGAACCAAACTTAATGAAGCATCATCAATTCACATGGAAACTCTAGCTTATAAATCAGCCAATTTTCCAACAAGGTTGCGTCTGAATCATGTTAGACATCTTGCACGAAACCGGACAAGTTTAATGGTTGATCTTGATCCTGCTGATACTCACCAGGTTGCAGCTGAGTTGATCATAAAGGAAGATGTATCAGTTGATTCAGGTAGCAAACCGAAATCCATGCGTTTGAATTGTGTGAAGCGCCTTGCCCGATCAATTAAATCTCCTCCTAAAGAGACTGCAGAACAGAAGGATCATAATTTGCTACCAGAAGGGATTCAATTACTTGGTAACGAGAGCTTTATAGCCTCTAGTTAA 2289 0.4329 MQTSQKHPTSAGIHLYHQQPMQDIDPYTQYQILQSSACHDSSSQGTNVSFEACKEQYFTLESSTGTTGLGCDSPSYASVSSNRGPFSPQASHSYHSDQHQSSDNTYGSPISVHSSADDSYELKHKLRELEISLLGPESDIVDSCNGCIKGGLHGASSTAKYNWSQIEEMIPKLDLREVLIRCAQAVSDGDVQTALGWMDNILGKMVSVAGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPTSKELMSYMHIMYQVCPYWKFAYVSANAVIGEAMQNESRIHIIDFQIAQGTQWLLLMQALACRPGGPPFIRVTGVDDSQSFHARGGGLHIVGKRLSDYAKSCGVPFEFHIAGMSGCEVELENLVVMPGEALAVNFPFILHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLDYYTAMFESIDVAVPRDDKKRISAEQNCVARDIVNMIACEGAERVERHELFGKWRSRFLMAGFVPCPLSSSVMGSVRNLLKEFNENYRVEHTDERADLRRMQREQERERRRIRDRQRRQSMTQEQRERHLARRRRNYQLRRQRAANANVHAPFIPPLPNPHGVELSAGEASTSDELQGVTSSTSLDYRVLCHGIGLPHHGLNQGQETLNLGTKLNEASSIHMETLAYKSANFPTRLRLNHVRHLARNRTSLMVDLDPADTHQVAAELIIKEDVSVDSGSKPKSMRLNCVKRLARSIKSPPKETAEQKDHNLLPEGIQLLGNESFIASS. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04373 762 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 116 523 IPR005202 -
Seca6g04373 762 Coils Coil 518 552 - -
Seca6g04373 762 ProSiteProfiles GRAS family profile. 166 548 IPR005202 -
Seca6g04373 762 MobiDBLite consensus disorder prediction 532 569 - -
Seca6g04373 762 MobiDBLite consensus disorder prediction 532 565 - -
Seca6g04373 762 Pfam GRAS domain family 175 530 IPR005202 -
Seca6g04373 762 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04373 Seca-Chr6 111326567 111330965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04373 1 523 GRAS Transcription Factor Family AT4G17230 58.824 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca6g04373 GRAS 3.4e-120 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04373 - - gmx:100819190 886.715