Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04360 ATGGGCAGTGATCAAAGTCAACAACCATTGCTTTCAGCTTCAAGAGAACATTGTCATCTCAATGAGAAGAGTGAGCTACAGAGAAGAAGGCTCCAATATGACAGTGCTTCAGAGACACAGATCAATCACCAAGAACAAAATGATGTCCAAAATCCTCTACACCCTCAATGTATAGCTGCAAAATCAGATTTCAATTTCAAACAAGTGTTTTTGTTGTTTGCTGCCTACTTAGGTGGAGGTACCCTATGTTTCTTTTTCACTGAGTATCAGATCAAGGGTATAAAAACCAATGGGTTTCTTGATTCTGTTTACTTCTGTGTTGTTACTATGACTACTGTTGGATATGGAGATCTAGTGCCTAATAGCTCATTGGCAAAACTTCTTGCCTGCATTTATGTCTTCATTGGCATGGCCCTTGGTGGATTAATTCTTAGCAAGGCAGCAGATTACATTGTTGAAAAGCAGGAAAACTTATTGGTTGGAGCCATACACATGGGCTATAAAGTTGGTCATGGAGAGGTTCCCAAAGTGCTTGAAGCCAATAAAACCAAATACAAATTAATGCTAGCAGCAGCCACTCTTGTGGGGCTCATGATTGTTGGAATTATTTTTCTCTATTTTGTTGAAAATCTAGAATTTATGGATGCCTTGTATTTTGTTTGTTCAACAGTCACTACCTTGGGTTATGGGGATAAGAGCTTCTCAACTGCTGAGGGTCGTATTTTTGCAATTTTCTGGATATTGAGTGGTACCATTTGCTTAGCTCAGTTCTTTCTCTATCTTGCTGAACTATACACTGAAGGTAGACAAAAATCACTGGCAAAAATGGTTCTTTCTCGAAGATTGTCACTCTCAGATCTTGAGACAGCAGATCTTGATCAAGACAAAGTTGTTAGTGCTGCAGAATTCATTGTATACAAGTTGAAGGAAATGGGAAAGATAAGTGAAGAAGACATTGCTGTTGTGATGGAGAGCTTTAGAAAACTAGACTATGATAATTCAGGAACTTTAACAGAAGCTGATATCAGATTTTGTGAATCTTCTTAA 1047 0.382 MGSDQSQQPLLSASREHCHLNEKSELQRRRLQYDSASETQINHQEQNDVQNPLHPQCIAAKSDFNFKQVFLLFAAYLGGGTLCFFFTEYQIKGIKTNGFLDSVYFCVVTMTTVGYGDLVPNSSLAKLLACIYVFIGMALGGLILSKAADYIVEKQENLLVGAIHMGYKVGHGEVPKVLEANKTKYKLMLAAATLVGLMIVGIIFLYFVENLEFMDALYFVCSTVTTLGYGDKSFSTAEGRIFAIFWILSGTICLAQFFLYLAELYTEGRQKSLAKMVLSRRLSLSDLETADLDQDKVVSAAEFIVYKLKEMGKISEEDIAVVMESFRKLDYDNSGTLTEADIRFCESS. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04360 348 SUPERFAMILY Voltage-gated potassium channels 62 153 - -
Seca6g04360 348 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 66 319 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca6g04360 348 SUPERFAMILY EF-hand 240 343 IPR011992 -
Seca6g04360 348 Gene3D - 168 290 - -
Seca6g04360 348 Gene3D - 47 159 - -
Seca6g04360 348 ProSitePatterns EF-hand calcium-binding domain. 330 342 IPR018247 -
Seca6g04360 348 Pfam Ion channel 194 265 IPR013099 -
Seca6g04360 348 Pfam Ion channel 79 152 IPR013099 -
Seca6g04360 348 PRINTS Two pore domain K+ channel signature 225 234 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca6g04360 348 PRINTS Two pore domain K+ channel signature 108 136 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca6g04360 348 SUPERFAMILY Voltage-gated potassium channels 180 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04360 Seca-Chr6 111198982 111200232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04360 1 348 Ion Channels AT5G55630 52.235 4.44e-121 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04360 K05389 - gmx:100799492 461.455