Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04351 ATGGGGAATGTGAATGGGAGAGACGATGTGAATGGTTCTCCATCAGGGGCTGAAGACGAAGAAGAAGAAGGAAGAGGAGGAGGTTGTGACAGTGTGAGCGATTGCATGTCTGCGCCCGATGTGATTGGGAACCCTGCGCCTTCTGAATTGATGGGTCACTCTCCCCCTGCTAGCCCTAGAGCAACCCAATCTCCATTCATGTTCACCCCTCAAGTCCCAGTGGTACCACTACAAAGACCTGATGAGATGCATGTTCTAAGCCCTTCCTGGATGCAAACTACTTCAGGGTATGAGGATGTATACTGTGAACTAGGAATTCCAACTATGATTACTTGGAGTTATGATGGCGAAGAAGTAGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAATGCCATTGCAGAGATCAGGAAAGGACTTCACAATAATGAAGGTACTGCCATCTGGTGTTTACCAGTTTAGATTTATTGTGGATGGACAGTGGAGGTACGCTCCTGATTTGCCTTGGGCCCAAGATGATACTGGGAATGCTTACAACGTTTTGGACTTGCAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGACTCTAGTTATAACAACTTACAACTCAGTTCTGAAGATTATGCAAAGGAGCCGCCATTGGTTCCTCCATTCTTGCAAATGACCCTCCTTAATGTTCCTTCAACAAATATGGAAATCCAGCCTCTCATGTCCAGACCTCAGCATGTATTGCTCAATCATCTCTATATGCAGAAAGAAAAGAGCAGCCCTTCAGTGGTTGCACTTGGTACAACTCATCGGTTTCTAGCCAAATATGTCACTGTGGTGCTGTACAAGTCTTTGCAGAGATAA 882 0.4512 MGNVNGRDDVNGSPSGAEDEEEEGRGGGCDSVSDCMSAPDVIGNPAPSELMGHSPPASPRATQSPFMFTPQVPVVPLQRPDEMHVLSPSWMQTTSGYEDVYCELGIPTMITWSYDGEEVAVEGSWDNWKTRMPLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDTGNAYNVLDLQDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDYAKEPPLVPPFLQMTLLNVPSTNMEIQPLMSRPQHVLLNHLYMQKEKSSPSVVALGTTHRFLAKYVTVVLYKSLQR. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04351 293 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 219 289 IPR006828 GO:0005515
Seca6g04351 293 Gene3D Immunoglobulins 103 188 IPR013783 -
Seca6g04351 293 Pfam Glycogen recognition site of AMP-activated protein kinase 106 185 IPR032640 -
Seca6g04351 293 SMART AMPKBI_2 201 291 IPR006828 GO:0005515
Seca6g04351 293 Gene3D - 194 291 - -
Seca6g04351 293 MobiDBLite consensus disorder prediction 1 66 - -
Seca6g04351 293 SUPERFAMILY E set domains 106 191 IPR014756 -
Seca6g04351 293 CDD E_set_AMPKbeta_like_N 107 183 - -
Seca6g04351 293 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 293 IPR043554 -
Seca6g04351 293 SUPERFAMILY AMPKBI-like 188 290 IPR037256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04351 Seca-Chr6 111155207 111157907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04351 105 186 Protein tyrosine phosphatase (PTP) family AT3G01510 31.818 1.70e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04351 K07199 - gmx:100777497 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00094 12 952655 956256 Seca6g04351 6 111155207 111157907 PCT