Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04348 ATGGCTGAATCTGATAACGAGTCAGGGGGTCAAACAGGGAACGGAAGTGGAAACAATGAATTTTCAGGATGCAGAGAGCAAGATAGGTTTCTTCCCATAGCGAACGTGAGCAGGATCATGAAGAAAGCTTTACCAGCAAACGCTAAGATCTCAAAGGAAGCGAAAGAAACAGTGCAAGAGTGTGTATCAGAGTTTATCAGTTTCATAACAGGGGAGGCTTCTGATAAGTGCCAGAAAGAGAAAAGGAAGACAATCAACGGTGATGATCTCCTCTGGGCCATGACCACACTTGGTTTTGAAGATTATGTGGACCCTCTCAAGATTTACCTTCACAAGTATAGAGAGATGGAAGGAGAGAAGACTGCTATCATAGGTAGGCCTCAGGGTGAACAGAGAGATCATGGGAATGCTGCTGCTGCTGCTGAGGCTAGTTATGCTCATGGTCATGGTCATGGTGGTGTGGTGCCATCTCCTATGATGATGATGATGGGGCATCAACATCAAGGCCACATGTATGGATCTGGGAGTGGATCAGCATCTTCTGGAAGGGCTAGATAG 558 0.4624 MAESDNESGGQTGNGSGNNEFSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVDPLKIYLHKYREMEGEKTAIIGRPQGEQRDHGNAAAAAEASYAHGHGHGGVVPSPMMMMMGHQHQGHMYGSGSGSASSGRAR. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04348 185 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Seca6g04348 185 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Seca6g04348 185 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Seca6g04348 185 Gene3D Histone, subunit A 19 148 IPR009072 GO:0046982
Seca6g04348 185 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Seca6g04348 185 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 138 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca6g04348 185 SUPERFAMILY Histone-fold 27 136 IPR009072 GO:0046982
Seca6g04348 185 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca6g04348 185 MobiDBLite consensus disorder prediction 1 23 - -
Seca6g04348 185 MobiDBLite consensus disorder prediction 1 25 - -
Seca6g04348 185 FunFam Nuclear transcription factor Y subunit B-3 19 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04348 Seca-Chr6 111138536 111139093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04348 1 171 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.251 6.03e-73 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca6g04348 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04348 K08065 - gmx:100305641 253.447