Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04346 ATGGACCTTTTCGCCGCCGATCACGTCGCTCCATTTCCCGATTCCGGCGACCTCATTTACGCCACCGACCTCCTTTCCCACCGCCACAATCCCCAGAAGCTCCGCCCCATCAGGTCCTCCGCCTCCGCTGGTTACCTCCTCCATCCCGACTCTTCATCTCGCAACCTCCACACTCCTCCCCACCTTCTAGCACCTCCACCCCAGCCGCAGGATCCGGCTGTTCCCGGGTCGGGTCACATACCGTTGCAACCGGGGCAGGAATCTGGCTCGGCTTTGGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGATGACAATTCATCAGTAAGTACTAGAGAACTTGGGTCTAGAAAGAGAAGGAAAAGGACGGTGAGAAAGCTTGAAGATTTTGTGGAAAATTTGGTAATGAAGGTGATGGAAAAGCAAGAGCAGATGCATAAAGAATTGGTGGACATGATAGAGAACAGGGAAAAGGAAAGAATAAAGAGAGAAGAAGCATGGAAGCATGAGGAGATGGAAAGAATTAAAAAGGATGAAAAAGCTAGAGCTCAAGAAAGGTCTCGTAATTTAGCCCTCATATCATTCATTCAGAACCTATTGGGCCATGAAATTCAGATCCCTCAACCAGCAGAAGGAAGCAGCAAAAGAGAAGAGGATGAAGCTGAGGTGAACATTCAAAAAGATTTCAATTTCAACAGTGATCTAAGTAACAACAGATGGCCAGATGTTGAAGTACAAGCACTCATAACTGTGAGAACTTCATTGGACCACAAGTTTCGTCTCATTGGATCAAAAGGATCATCAATATGGGAAGAGATATCTGAAACAATGCATGGCATGGGATACAAACGTTCTGCAAAGAAGTGTAAGGAGAAATGGGAAAACATCAACAAGTACTATAAGAGGACAATGGGGAGCGGCAAGAAAAGGCGTCAAAATAGTAAAACTTGCCCTTACTTTGATGAGCTTGACATTCTTTATAGAAATGGGCTCCTCAATCATGGAAATACGTTGAGCAATACCAACAGTGTTCCCAATGTTGAAGAAAAGGAAAAGAGTGAAACTTGA 1098 0.4581 MDLFAADHVAPFPDSGDLIYATDLLSHRHNPQKLRPIRSSASAGYLLHPDSSSRNLHTPPHLLAPPPQPQDPAVPGSGHIPLQPGQESGSALDDDDDEEEEEEEEEEEEEEEEDDNSSVSTRELGSRKRRKRTVRKLEDFVENLVMKVMEKQEQMHKELVDMIENREKERIKREEAWKHEEMERIKKDEKARAQERSRNLALISFIQNLLGHEIQIPQPAEGSSKREEDEAEVNIQKDFNFNSDLSNNRWPDVEVQALITVRTSLDHKFRLIGSKGSSIWEEISETMHGMGYKRSAKKCKEKWENINKYYKRTMGSGKKRRQNSKTCPYFDELDILYRNGLLNHGNTLSNTNSVPNVEEKEKSET. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04346 365 Gene3D - 250 312 - -
Seca6g04346 365 PANTHER FI21293P1 79 359 - -
Seca6g04346 365 MobiDBLite consensus disorder prediction 44 132 - -
Seca6g04346 365 Coils Coil 149 169 - -
Seca6g04346 365 Pfam Myb/SANT-like DNA-binding domain 248 334 IPR044822 -
Seca6g04346 365 FunFam Trihelix transcription factor GT-2 250 312 - -
Seca6g04346 365 MobiDBLite consensus disorder prediction 90 117 - -
Seca6g04346 365 MobiDBLite consensus disorder prediction 60 74 - -
Seca6g04346 365 Coils Coil 92 116 - -
Seca6g04346 365 CDD GT1 248 313 - -
Seca6g04346 365 ProSiteProfiles Myb-like domain profile. 242 307 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04346 Seca-Chr6 111126410 111128283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04346 128 339 Trihelix Transcription Factor Family AT5G47660 44.444 2.29e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca6g04346 Myb_DNA-bind_4 1.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04346 - - gmx:100820302 444.121