Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04340 ATGATTCAACTTCTTTGTAGGATTATAATGAGTGAACAATTGGGGCTGCTGAAAGTCAAAGTTGTGCAGGGGAAAAGGTTGGTCATCCGGGATTTCAAGAGTAGTGATCCATATGTTGTGCTCAAACTAGGGAATCAGACTGCAAAGACCAAGGTCATCAATAGCTGTTTGAATCCTGTTTGGAATGAAGAGCTCAATTTCACTCTGACAGAACCCTTGGGAGTTCTCAACTTGGAAGTATTTGATAAAGATCTTTTGAAGGCTGATGATAAGATGGGAAATGCATTTGTAAACCTTCAACCATTAGTCTCAGCAGCTAGATTAAGAGATATTTTACGAGTCTCTTCTGGTGAAACAACATTAAGGAAGGTTATACCTGATAGTGAAAATTGTCTTGTCCGTGAAAGCAGTATCAATTGTGTTAATGGTGAGGTGGTGCAGAATGTTTGGTTAAGGCTTCGTGGAGTAGAATCTGGGGAGCTAGAATTGACAATCAAGTTGGTCACACCTGTTTCTACTTCAATGTAA 528 0.3958 MIQLLCRIIMSEQLGLLKVKVVQGKRLVIRDFKSSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTLTEPLGVLNLEVFDKDLLKADDKMGNAFVNLQPLVSAARLRDILRVSSGETTLRKVIPDSENCLVRESSINCVNGEVVQNVWLRLRGVESGELELTIKLVTPVSTSM. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04340 175 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 167 IPR035892 -
Seca6g04340 175 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Seca6g04340 175 PRINTS C2 domain signature 76 84 IPR000008 -
Seca6g04340 175 PRINTS C2 domain signature 55 68 IPR000008 -
Seca6g04340 175 PRINTS C2 domain signature 31 43 IPR000008 -
Seca6g04340 175 CDD C2_ArfGAP 14 159 - -
Seca6g04340 175 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 13 169 IPR044562 -
Seca6g04340 175 Gene3D C2 domain 12 173 IPR035892 -
Seca6g04340 175 SMART C2_3c 16 111 IPR000008 -
Seca6g04340 175 Pfam C2 domain 15 108 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04340 Seca-Chr6 111068970 111071367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04340 3 166 C2H2 Transcription Factor Family AT4G05330 44.512 7.62e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04340 - - gmx:100499880 305.449