Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04334 ATGTTAACTGAGACCTTGCACCATTCAGATGAAGGTGTGTCTATGGACAACTCCAAGATGTTCAACTATGGCAGCACCAGCGTGAGTGAGATAGAGGAAGAGAACTCCAACTCCTCACAGTTGTATTTGAATGATGGTCCTACTCCTATTCCTATTCCTATGGCAACCATTAGTGAAGAAGAGAATGAGGCTGAAGACACTGTTTATGTAGCAGTGGGTAAGAGTGACACTAGCATGGAAGCCCTGTCATGGACCCTCAATAACTTGGTTACTCCATCTACCTTTGTGTATCTCATACACGTTTTCCCAGAGATCAAGAACATTCCAAATCCTTTGGGAGTGGGAATGATCCCAAAGGAGCAAGTGAGTCCTGAGCAAGTGGAGAGCTATATGGCCCAAGAAAGAGGTAAGAGAAGAGAGCTCCTTCACAAGTTCCTCCAATCATGCTCTGCTTCCAAGGTTAAGGCGGACACCATCCTGATTGAGAGTGACTTCATTGCTAAGGCTATCATTGACCTGATTCCCATTCTTCAAATAAGAAAATTAGTGATTGGAGCCAACAAATCCCAATTAAGAAAACTAAGATCAAGGAAAGGGAATGGCATAGCTGATCAGGTACTTCAGAATGCACCAGAAAGTTGCAAGGTGAGAATTGTATGTGAAGGGAAGGAAGTGAATGAACAGATAGCTCGTGCCATTGCTAATGATAGTTCCATGTCCCAGAAAGAAGATCAGCAAAATGAATGGGAAACAAGGCATGGGTGCTTGCACTATGATTCCGATGAAGAAACCTCCACCTGCACTTGTGTTTTCACCGGGTTCAGAAGAAACCAAGTGTTTGATTACAACCAAAGTTTCAGCACAAATGAAGATTCAGAGGAGCTGTTTGAGATCAATTTAAAGTTGCCATTGGATGCAATATCAGAAGATTGTGAGAGCAGTGTGTTCTCTTTTGATATTCACAATGAGAAAGATATTGTTCATGTGGCAGTGGACCACACTGGAGAATCAAGCATGGAAGCACTTTTGTGGACTTTGAAACATGCTGTGACACCCTCTACCACTGTCTATCTCATACATGTTTTTCCTGAAATCAGGCTTATTCCAACTCCACTTGGAAAAATGGTAAGGAGTCATGTAAATCCAGAGCATGTTGACTTTTACTTGACTCAAGAGAAAAGCAAGAGGAAACTGCTCCTTCAAAAGTTCATTGATTTGTGCACTGATTCAAAGGTTGAGGTGGAGATGATGCTTATTGAGGGTGACAACATTGCCAATACCATAGTGGACCTTGTTAGGAATTTTAGCATAAGGAAATTGGTGATTGGAACTACCAAATCTAACTTAAGCAAATCTGTGTCTAGAAAGAGAAATGCCATAGCAGATAAGGTCCTAAAGAATGCACCAGAAATCTGTGATGTTAAAATATTATGTGATGGAAAGGAAGTGATTGATCAGATGATTGGTCGCACTTCATCATGCTCCAGTGATGGTAGCAGTTCCAGAGTTTCACAAGAAGATAAATTCCATGGTTTTGCTCCTCTTGTGCGTTTTATGCCTAATCCTATATGGTTATTCAAACCCAGATTTTGA 1593 0.4131 MLTETLHHSDEGVSMDNSKMFNYGSTSVSEIEEENSNSSQLYLNDGPTPIPIPMATISEEENEAEDTVYVAVGKSDTSMEALSWTLNNLVTPSTFVYLIHVFPEIKNIPNPLGVGMIPKEQVSPEQVESYMAQERGKRRELLHKFLQSCSASKVKADTILIESDFIAKAIIDLIPILQIRKLVIGANKSQLRKLRSRKGNGIADQVLQNAPESCKVRIVCEGKEVNEQIARAIANDSSMSQKEDQQNEWETRHGCLHYDSDEETSTCTCVFTGFRRNQVFDYNQSFSTNEDSEELFEINLKLPLDAISEDCESSVFSFDIHNEKDIVHVAVDHTGESSMEALLWTLKHAVTPSTTVYLIHVFPEIRLIPTPLGKMVRSHVNPEHVDFYLTQEKSKRKLLLQKFIDLCTDSKVEVEMMLIEGDNIANTIVDLVRNFSIRKLVIGTTKSNLSKSVSRKRNAIADKVLKNAPEICDVKILCDGKEVIDQMIGRTSSCSSDGSSSRVSQEDKFHGFAPLVRFMPNPIWLFKPRF. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04334 530 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 23 269 - -
Seca6g04334 530 Gene3D HUPs 320 477 IPR014729 -
Seca6g04334 530 CDD STK_N 67 222 - -
Seca6g04334 530 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 329 474 - -
Seca6g04334 530 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 67 216 - -
Seca6g04334 530 Gene3D HUPs 58 231 IPR014729 -
Seca6g04334 530 Pfam Universal stress protein family 327 469 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04334 Seca-Chr6 111029232 111035237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04334 327 480 U-box Gene Family AT2G45910 30.323 6.56e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04334 - - gmx:100818837 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00082 12 841965 852397 Seca6g04334 6 111029232 111035237 PCT