Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04285 ATGTCTGCTACTTATCTGGCCTTCCAATCATGTGTTTTCTTGACTTCTCAGTTTACTCAGTCTGGCTTCAGTCTCGCACCTAAACCCTTTTTCTCAAATTTTGGAGCAATTGTAACTTTTGCTATATTCGGTACTTTTCTAGCTTCAATTGTGACGGGTGTCTTGGTTTATCTGGGTGGGCTGCTTTTCCTCATGTATAGACTACCTTTTGTTGAGTGCCTGATGTTTGGTGCTCTTATATCAGCAACCGATCCTGTTACTGTTTTGTCCATATTTCAGGAGTTGGGCACAGATGTCAATCTATATGCCTTGGTTTTTGGAGAATCTGTTTTGAATGATGCTATGGCAATTTCTTTGTACAGGACAATGTCAATGGTTAAAACTCATCCATCTGGACAAAATTTATTCATGGTGGTTGTTAGATTTTTAGAGACTTTTGTTGGGTCAATGTCTGCAGGTGTTGGAGTTGGGTTTATATCTGCTTTGCTATTTAAGTATGCAGGGCTCGATATTGACAACCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTTTTCCCATATTTCTCGTACATGCTTGCTGAAGGCCTTGGTCTGTCTGGTATTGTATCAATACTGTTCACAGGAATTGTCATGAAGCACTATTCGTATTCAAATTTGTCACAAAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGCTGATATCATCATTAGCAGAAACATTTGTATTTATATACATGGGCTTTGATATTGCTATGGAGCAACATAGCTGGTCTCATGTTGGATTTATATTCTTCTCCATTATATTCATTGGAATTGCAAGAGCGGCAAATGTCTTCTCTTGTGCTTATCTGGTCAATCTGGCCAGACCTGCTCATCGAAAGATACCTCCAAAACACCAAAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCACTTGCTCTGCAATCAGTTCATGATCTTCCAGAAGGACATGGACAGACAATCTTTACTGCAACTACAGCAATAGTTGTTTTGACGGTATTGCTGATTGGTGGTTCAACAGGTACCATGCTGGAAGCTCTAGATGTTGTTGGTGGTGACAGTCATGACGATAGCCCTTTGGCTTCAGTTGGTACCATCACAAGTTACGACGGGAACAATGGTTATATTGCTCCTTCGTATAGTGAAGAATCATCATCATCTGGGAACAAAATCAAGATGAAGCTAAAAGAATTCCACAAGAGTGCTGCGTCTTTTACAGCATTAGATAGAAACTACCTCACCCCATTCTTTACTAGTCAAAATGGAGATGAAGATGAGGAAGCCGAGCCTTTTACTTCTACAAGATCCGGATTTCACGGCCAGAACCATTATTCATCGTGA 1374 0.4032 MSATYLAFQSCVFLTSQFTQSGFSLAPKPFFSNFGAIVTFAIFGTFLASIVTGVLVYLGGLLFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSMVKTHPSGQNLFMVVVRFLETFVGSMSAGVGVGFISALLFKYAGLDIDNLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKHYSYSNLSQSSQRFVSAFFELISSLAETFVFIYMGFDIAMEQHSWSHVGFIFFSIIFIGIARAANVFSCAYLVNLARPAHRKIPPKHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALDVVGGDSHDDSPLASVGTITSYDGNNGYIAPSYSEESSSSGNKIKMKLKEFHKSAASFTALDRNYLTPFFTSQNGDEDEEAEPFTSTRSGFHGQNHYSS. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04285 457 Gene3D - 70 122 - -
Seca6g04285 457 PRINTS Na+/H+ exchanger signature 37 45 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca6g04285 457 PRINTS Na+/H+ exchanger signature 22 36 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca6g04285 457 PRINTS Na+/H+ exchanger signature 77 87 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca6g04285 457 PANTHER SODIUM/HYDROGEN EXCHANGER 17 444 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Seca6g04285 457 NCBIfam sodium/hydrogen exchanger 3 18 366 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca6g04285 457 MobiDBLite consensus disorder prediction 428 457 - -
Seca6g04285 457 Pfam Sodium/hydrogen exchanger family 21 356 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04285 Seca-Chr6 110601714 110608293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04285 20 358 Antiporters AT3G05030 34.444 1.50e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04285 K14724 - gmx:100790830 772.311