Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04276 ATGAGCGAAGGGCCATGGTCGTGGAGACGCAGTGGACGTGTTAGGGTTTTGGAGAGAGGGTCCCAGTGGTTAGGTGCCATCATGAAGAGGCCATGGCTGCACACTGCTTTCTCCAATCGAAATGGCTCTGTTTCTGATACTGCAGCTGCAGCTATTCCCAATGGAAGTTCCATTTCGAACCATGTTGGTAATGGAGAACTTTCTATTTCTAGCTTACCGCAATTAGGTTTACAAGTGTGTTTTCCTAGCTCCTCCATTCTGCCATTCTTCCTTCTTCTATTCTACTGCATTGATATTAGTATGCTCTGTTTCTCCGGGAAACGGTTGATCATGGGTGAAAGATATCTAGCATTCCTACTACTCATTTTCAGTTACTTTTTTATTGCGGTAGCAGATAAAGCATCGCAGGATTACAATGTTATGCTGACTTTGAAGTTTGAGTGGGAGAACACATCACCACCTATTTGGGTGGGCACAGATCCTTGTGGTGATGATGGTTGGGTGGGCATTAAGTGCTTCAATTCACGCGTTACCAGCATAACATTAGCAAGCATGAATTTGTCTGGCAAGCTTCCTTCAGATATTGGATTACTATCTGAATTGCAGATTTTGGATCTGTCTTACAATAAGAATTTAAAAGGACCACTTACCAGTGAAATTGGAAACTTGAGAGAGTTGACACACTTATTTCTTATTAATTGTGGTTTCACTGGTCCTATCCCAAATACAATAGGAAATCTAAAACGGCTTGTCTTCCTATCTTTAAATAAAAATAGCTTCAGTGGGCGAATTCCTCCTGATATTGGTAAGCTCTCTAATCTTAATTGGCTGGACTTAGCTGAAAACAAGCTCGAGGGGCCCATCCCAATATCTAATGGAACTACTCCTGGTCTTGATATGTTGCACCGTACAGAGCACTTACTCTTTGAAGGTAACAGACTTACTGGTGTGATTCCATCTACACTTGTACTTGTCCAGTCTCTGGAGGTGGTGCGCTTCGATGGTAATATTTTAAGTGGACCTTTACCTGTGAACCTCAACAATCTTACAAAAGTTCAGGAGTTGTTCCTGTCCAAAAATCGCCTATCTGGTCCCCTGCCAAACCTTACTGGAATGAATGTCCTCAGCTACCTAATGATGGATAAGACACAACTTCAAGGACAAATTCCTGTTTCTTTGTTCAGCCAGCTGGAACTGTTGCAGACAGTGGTGCTGAGAGACAACCGGCTGAATGGCACTTTAGATATTGGCACAGCCATGAGTAACGAACTGGTACTCCTTGATTTGCAGAAAAATTTAATTGAAGAATTTGCTCCAAAAATTGATGTCTCCAAAGTGGAGATAATACTTGTGGACAACCCAGTTTGTCAAGACACAGGAGTTGTACAGACTTACTGCTCCATTGCAAAATCCAATGACTCATACAAAACACTACCAAATAACTGTGCGGCTGTTACCTGTAACTCAGATCAGATATTAAGCCCCAACTGCAAATGTGCATACCCATATACAGGAACTTTAATTTTCAGATCTACTTCCTTCTCAGACTTGGGAAACCAGACTGTCTTCCGAAACCTGGAGTTATCTTTGATGCAGTCTTTTCAACTTTATGATAAACCTGTGGATTCAATTTCTTTAAGCAATCCAAGGAAGGATGAAATTCAGTATCTTAAGCTGACATTAGAAATATTTCCATCAGGCCAAGATCATTTCAATCGAACTGGGATGTCTGGTATAGCTTTTGTGCTTAGCAACCAGACATATAAGCCTCCTAAAGGAATGTTCGGACCATATTATTTTATTGCTGATACGTATGCACACTATTTGGATGATTTAGGTCCTGCGGAGTCCAGTAAATCTTCAAATATTGGCATCATAGCTGGTGCTGCTGCTGGTGGTTCTGTCCTGCTTGTGTTATTACTCCTTGCAAGTGTTTATGCTTTCCGCCAAAAGAAGAAGGCAAACAGAGCAACTAGGAGAAGCAATCTTTTTGAACAATGGGATCCGGATGAGAGCAATAGTAACATCCCACAGTTAAAAGGAGCAAAGCGGTTCACTTTTGAAGAGATGCAGAACTACACCAGAAACTTTTCACAAAGCAACAATATAGGATCTGGGGGTTATGGAAAGGTTTATAGGGGAACTCTTCCTAATGGGCAACTAATTGCAGTAAAACGAGCTCAAAAGGAATCAATCCAGGGAGGGCTGGAGTTTAAAACAGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTCACCCTTCTTGGTTTCTGCTTTGAGCAAGGAGAACAAATGCTGGTTTATGAGTATGTTGTAAATGGTACTTTGACGGATGCTCTTTCAGGGAGGTCAGGAATTAGATTGGACTGGATTAGAAGGCTAAAAATAGCTCTTGGTGCTGCCAGGGGATTGGATTATCTGCATGAACTTGCCAATCCTCCTATCATACACAGAGACATCAAATCCACTAACATTTTATTGGATGAACGCTTGAACGCTAAAGTTGCTGATTTTGGTCTTTCCAAGCCTTTGGGTACTGGTGGAAAACGTTATATCACGACTCAAGTCAAAGGAACAATGGGCTACTTGGACCCAGAGTATTACATGACTCAACAGTTGACTGAGAAGAGTGATGTTTTTAGCTTTGGAGTGCTAATGTTGGAGCTTATGACTGGAAGAAAGCCAATAGAACGAGGTAAATATATTGTGAAATTGATTAAGAATGCTATTGACAAGACAAAAGACTTATATGGTCTTAAGGAAATGCTTGATCCAACCATTGAATTGGGGACAACACTGAACGGTTTTGATAAGTTTGTGGATCTTGCAATGCAATGTGTTGAAGAGTCAAGTTCTAATAGGCCTTCGATGAATTATGTGGTGAAAGAAATTGAGAACATGTTGCTGTTGGCTGGTTCAAACCCCCATGCTGATTCAATTTCCACTTCATCTAGTTTTAATATGAGTAAGGGGAGTCCCACGCATCCTTATGACAATGATTACTTTGGTTCAAGTGTGGTAATGAGCCTATATGTGTAG 3045 0.4105 MSEGPWSWRRSGRVRVLERGSQWLGAIMKRPWLHTAFSNRNGSVSDTAAAAIPNGSSISNHVGNGELSISSLPQLGLQVCFPSSSILPFFLLLFYCIDISMLCFSGKRLIMGERYLAFLLLIFSYFFIAVADKASQDYNVMLTLKFEWENTSPPIWVGTDPCGDDGWVGIKCFNSRVTSITLASMNLSGKLPSDIGLLSELQILDLSYNKNLKGPLTSEIGNLRELTHLFLINCGFTGPIPNTIGNLKRLVFLSLNKNSFSGRIPPDIGKLSNLNWLDLAENKLEGPIPISNGTTPGLDMLHRTEHLLFEGNRLTGVIPSTLVLVQSLEVVRFDGNILSGPLPVNLNNLTKVQELFLSKNRLSGPLPNLTGMNVLSYLMMDKTQLQGQIPVSLFSQLELLQTVVLRDNRLNGTLDIGTAMSNELVLLDLQKNLIEEFAPKIDVSKVEIILVDNPVCQDTGVVQTYCSIAKSNDSYKTLPNNCAAVTCNSDQILSPNCKCAYPYTGTLIFRSTSFSDLGNQTVFRNLELSLMQSFQLYDKPVDSISLSNPRKDEIQYLKLTLEIFPSGQDHFNRTGMSGIAFVLSNQTYKPPKGMFGPYYFIADTYAHYLDDLGPAESSKSSNIGIIAGAAAGGSVLLVLLLLASVYAFRQKKKANRATRRSNLFEQWDPDESNSNIPQLKGAKRFTFEEMQNYTRNFSQSNNIGSGGYGKVYRGTLPNGQLIAVKRAQKESIQGGLEFKTEIELLSRVHHKNLVTLLGFCFEQGEQMLVYEYVVNGTLTDALSGRSGIRLDWIRRLKIALGAARGLDYLHELANPPIIHRDIKSTNILLDERLNAKVADFGLSKPLGTGGKRYITTQVKGTMGYLDPEYYMTQQLTEKSDVFSFGVLMLELMTGRKPIERGKYIVKLIKNAIDKTKDLYGLKEMLDPTIELGTTLNGFDKFVDLAMQCVEESSSNRPSMNYVVKEIENMLLLAGSNPHADSISTSSSFNMSKGSPTHPYDNDYFGSSVVMSLYV. 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04276 1014 ProSitePatterns Protein kinases ATP-binding region signature. 703 725 IPR017441 GO:0005524
Seca6g04276 1014 CDD STKc_IRAK 703 969 - -
Seca6g04276 1014 Gene3D Phosphorylase Kinase; domain 1 667 772 - -
Seca6g04276 1014 ProSiteProfiles Protein kinase domain profile. 697 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04276 1014 Gene3D Ribonuclease Inhibitor 135 296 IPR032675 -
Seca6g04276 1014 FunFam Leucine-rich repeat protein kinase family protein 661 772 - -
Seca6g04276 1014 Gene3D Transferase(Phosphotransferase) domain 1 773 980 - -
Seca6g04276 1014 FunFam Leucine-rich repeat family protein 136 294 - -
Seca6g04276 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Seca6g04276 1014 Gene3D Ribonuclease Inhibitor 297 445 IPR032675 -
Seca6g04276 1014 Pfam Protein kinase domain 698 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04276 1014 SUPERFAMILY Protein kinase-like (PK-like) 683 986 IPR011009 -
Seca6g04276 1014 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 120 978 - -
Seca6g04276 1014 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 773 982 - -
Seca6g04276 1014 SUPERFAMILY L domain-like 165 434 - -
Seca6g04276 1014 SMART serkin_6 697 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04276 Seca-Chr6 110514504 110522832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04276 111 1004 Receptor kinase-like Gene Family AT5G49760 52.687 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca6g04276 Pkinase 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04276 - - gmx:100780344 1273.84