Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04275 ATGGGTGAAAGAATTCTAGCATTCCTACTACTCATTTTCAGTTATTTGTTGATTGTGGTAGCAAAAACAGCACCTCAAGATTACAATGCTTTGCTGACTTTGAAGTTAGAGTGGCAGAACACACCACCTGATTGGGTGGGCACAGATCCTTGTGGTGATGGTTGGGAGGGAATTCAATGCTTCAATTCACGCATTACCAGCTTATCATTAGCAAGCATGGATTTGTCTGGCCGGCTTTCATCAGATATTAGATTACTATCTGAATTGCAGATTTTGGATCTATCTTACAATAAGAATTTAAAAGGATCACTTCCCAGTGAAATTGGAAACTTGAGAAAGTTAACACACTTACTTCTTATTAATTGTGGTTTCACTGGTTCTATCCCGGATACAATAGGAAATCTAGAACGGCTTGTCTTCCTATCTTTAAATTCTAATGGCTTCAGTGGGCAAATTCCACCTTCTATTGGTAATCTCTCAAAGATTTATTGGCTAGACTTAGCTGAAAACCAGCTTGAGGGGTCCATCCCCATATCTAATGGAACTACTCCTGGTCTTGATATGCTGCACCATACAAAGCATTTTCATTTTGGGATGAATAAGCTTTCAGGCAATATTCCTTCTCAACTTTTTAGCTCTGAAATGTCTCTGATACATGTACTTTTTGAAAGTAATCAACTTACTGGCACCATTCCACCTACACTTGGACTTGTCCAGTCTCTGGAGGTGGTACGCTTTGATGATAATTTTTTAAGTGGACCTTTGCCTGTGAATCTCAACAATCTTACAAATGTTCAGGAGTTGTTCCTGTCCAATAATCGCCTATCTGGTCCCCTGCCAAACCTTACTGGAATGAATGTCCTCAGCTACCTGGATATGAGCAATAATAGTTTTGATTCACCAGACTTTCCACCTTGGTTATCCACTCTAAAGTCTCTAACAACAATAATGATGGAGAGTACACATCTTCAAGGACATATTCCTGTTTCTTTGTTCAGCCTGGTACATTTACAGACAGTGGTGCTGAAACACAACCAGCTGAATGGAACTTTAGATATTGGCACATCCATCAGTAACCAACTGGGACTCCTTGATTTGCAGACTAATTTAATTGAAGGATTTAATCCACAAATTGATGTCTCTAAAGTGGAGATAATACTTGTGAATAACCCAATTTGCCAAGAAACAGGAGTTGTAAGGACTTATTGCTCCATTAAAAAATCCAATGACTCATATACAACATCACCAAAAAACTGTGTGCCAGTTTCCTGCAACTCAGATCAGATATTAAGCCCCAACTGCAAATGTGCATTCCCATATACAGGAACTTTAACTTTTAGAGCTCCTTCCTTCTCAAACTTGGGAAATGATACTGTCTTTGTAAACCTGGAATTATCTCTGATGCAGTCTTTTCAACGTTATGATAAACCTATGGATTCAGTTTCTTTAAGCAATCCAAGGAGGAATACAGTGTACTATCTTGATTTGACTTTAAAAGTATTTCCATCAGGCCAAGATCATTTCAATAGAACAGGGATTTCTGGTATAGCCTTTCTGCTTAGTAACCAGACATATAAGCCTCCTGCAATGTTTGGACCATATTATTTTATTGCTGATAAGTATGGACACAATATGGATGATTCAGTATTAGAAGGTCCTGTGACATCCAGTAAATCTTCAAACATTGGCATCATAGCTGGAGCTGCTGTTGGTGGTTCTGTCCTGCTTGTGTTATTACTCCTTGCAAGTGTTTATGCTTTCCGCCAAAAGAAAAAGGCAAAAAGAGCAGCTAGGAAAAGCAATCTTTTTGAACAATGGGATCCAGATGAGAGCAATAGTAGCATCCCACAGTTAAAAGGAGCAAAGCGCTTCACTTTTGAAGAGATGCAGAACTACACCAAAAACTTTTCACAAAGCAATAATATAGGATCTGGAGGTTATGGGAAGGTTTATCGGGGAACTCTTCCCAATGGGCAACTAATTGCTGTAAAACGAGCTCAAAAGGAATCAATCCAGGGAGGGCAGGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTTAGCCTTCTAGGTTTCTGCTTTGAGCAAGGAGAACAAATGCTGGTTTATGAGTATGTTGCAAATGGTACATTGACGGATGCTCTTTCAGAGTATTACATGACTCAACAGTTGACTGAGAAGAGTGATGTTTATAGCTTTGGAGTGCTAATGTTGGAGCTGATAACTGCAAGAAGGCCAATAGAACGAGGGAAATACATTGTGAAATTGATTAAGAATGCTATTGACAAGACAAAAGACTTATATGGTCTTAAGGAAATGCTTGATCCAACCATTGAATTGGGGACAACACTGAACGGTTTTGATAAGTTTGTTGATCTTGCAATGAAATGTGTTGAAGAGTCAAGTTCTAATAGGCCTTCGATGAATTATGTGGTGAAAGAAATTGAGAACATGTTGCAGTTAGCTGGTTCAAACCCCCATGCAGATTCAGCATCCACTTCATCTAGTTTTAATTTATTTGTTGATTGTGGTGGCAAACACAAGCAACCAGGATTAGGCCTTCAGCATTCACTCTTATCTTCTGATGCAGACACTGCTCTGCTGACTTTGAAGTATGGGTGGCAGAATACCCCACCTGATTGGGTGGGTTCAGATCCTTGTGGTGATCGTTGGACAGGCATTCAGTGCTCCAATTCACGCATTACTAGCCTGTCATTAGCAAGCATGGGTTTGTCTGGCCAGCTTTCTTCAGATATTGGATTACTTTCTGAATTGCGGATTTTACTTCTTATCAATTGTGGTTTCACTGGCTCTATCCCAGATACAATAGGAAATCTAGAACGGCTTGTCTTCCTGTCTTTAAATTCTAATAGCTTCAGTGGGCGAATTCCACCTGCTATTGGTACTCTCTCTAATATTTATTGGCTTGACTTAGCTGAAAACCAGCTTGATGGGCCCATCCCAATATCTAATGGAACTACTCCCGGTCTTGATATGTTGCACCATACAAAGCACTTTCATTTTGGGATGAATAAGCTTTCAGGCAATATTCCTTCTCAACTTTTTAGCTCTGAAATGTCTCTGATACATGCACTTTTTGAAGGCAACTCACTTACTGGCAGCATTCCATCTACACTTGGACTTGTCAAGTCTCTCGAGGTGGTGCGCTTTGATGGTAATTTTTTAAATGGACCTTTGCCTTTGAACCTCAACAATCTTACAAAAGTTACGGATTTGTTCCTGTCTAACAATCGCATACCTGGTCCCCTGCCAAACCTTACTGGAATGAATGCCCTCAGCTACCTGGATGTGAGCAATAATAGTTTTGATCCATCAGTATTTCCACCGTGGTTATCAACTCTACCGTCTTTGACAACACTAATGATGGAAAATACACAACTTCAAGGACAAGTTCCTGTTTCTTTGTTCAGCTTGGTACAGTTACAAACAGTGGTGCTGAAAAACAATCAGCTGAATGGCACTTTAGACATTGGCACAGCAATCAGCAACCAACTGGAACTCCTTGATTTGCAGACTAATTTAATTGAAGCATTTGATCCAAAAATTGATGTCTCCAAAGTGGAGATAATACTTGCGAAAAATCCAGTTTGCCAAGACACAGGAGTTGTACGGACTTATTGCTCCATTGCAAAATCCAATGACTCATACAAAACACCACCGAATAACTGTGTGCCTGCTACCTGTAGCTCAGATCAGATATTAAGTCCCCACTGCAAATGTGCATACCCATATACAGGAACTTTAACTTTCAGAGGTCCTTCCTTCTCAGGCTTGGGAAATGATACTGTCTTTGTAAACCTGGAGTTATCTCTGATGCAGTCTTTTCAACTTTATGAAACACCTGTGGATTCAGTTTCTTTAAGCAATCCAAGGAAGGATGTAGACAGAATTCAGTATCTTGAGTTGACTTTACAAGTATTTCCATCAGGCCAAGATCGTTTCAATCGATCTGGGATTTCTGGTATAGCCTTTCTGCTTAGCAACCAGACATATAAGCCTCCTGCAATGTTCGGACCATATTATTATATCGCTGATACTTATGAACACTATTTGGATGACTTAGGTCCTGTAGCATCCAGTAAATCTTCAAATATTGGCATCATAGCTGGAGCTGCTGCTGGTGGTTCTGTCCTGCTGGTGTTATTACTCCTTGCAAGTGTTTATGCTTTCCGCCAAAAGAAAAAAGCAAAAAGAGCAACTAAACAATGGGATCCGGATGAGAGCAACAGTAGCACCCCACAGTTAAAAGGAGCAAGACGCTTCACTTTTGAAGAGATGCAGAACTACACCAAAAACTTTTCACAAGTCAACAATATAGGATCTGGGGGTTATGGGAAGGTTTATCGAGGAACTCTTCCCAATGGAGAACTAATTGCAGTAAAACGAGCTCAAAAAGAATCAATCCAGGGAGGACTAGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCACCACAAAAATCTTGTTAGCCTTCTCGGTTTCTGCTTTGAGCAAGGAGAACAAATGCTGGTTTATGAGTATGTTGCAAATGGCACTTTGAAGGATGCTCTATCAGAGTATTATATGACTCAACAGTTGACTGAAAAGAGTGATGTTTATAGCTTTGGAGTGCTAATGTTGGAGTTGATAACTGCAAGAAAGCCAATAGAACGAGGGAAATATATTGTGAAACTGGTTAAGAGTGCTATTGACAAGACAAAAGACATATATGGTCTGAAGGAAATTCTTGATCCAACCATTGATTTAGGGACAACACTGAATGGTTTTGATAAGTTTGTGGATCTGGCATTGCAATGTGTTGCAGAGTCAAGTTCTAACAGGCCTTCAATGAATTACGTGGTGAAAGAAATTGAAAACATGTTGCATTTGGCTGGTTCAAACCCCAATGCTGAATCAGCATCTAGTTCATCTAGTTATAATGTAAGTAAAGGGACCCTGCATCCTTATGACAATGAGTACTTTGGTTCAAGTGTGCTACTTCCACGTGCATAA 5034 0.3975 MGERILAFLLLIFSYLLIVVAKTAPQDYNALLTLKLEWQNTPPDWVGTDPCGDGWEGIQCFNSRITSLSLASMDLSGRLSSDIRLLSELQILDLSYNKNLKGSLPSEIGNLRKLTHLLLINCGFTGSIPDTIGNLERLVFLSLNSNGFSGQIPPSIGNLSKIYWLDLAENQLEGSIPISNGTTPGLDMLHHTKHFHFGMNKLSGNIPSQLFSSEMSLIHVLFESNQLTGTIPPTLGLVQSLEVVRFDDNFLSGPLPVNLNNLTNVQELFLSNNRLSGPLPNLTGMNVLSYLDMSNNSFDSPDFPPWLSTLKSLTTIMMESTHLQGHIPVSLFSLVHLQTVVLKHNQLNGTLDIGTSISNQLGLLDLQTNLIEGFNPQIDVSKVEIILVNNPICQETGVVRTYCSIKKSNDSYTTSPKNCVPVSCNSDQILSPNCKCAFPYTGTLTFRAPSFSNLGNDTVFVNLELSLMQSFQRYDKPMDSVSLSNPRRNTVYYLDLTLKVFPSGQDHFNRTGISGIAFLLSNQTYKPPAMFGPYYFIADKYGHNMDDSVLEGPVTSSKSSNIGIIAGAAVGGSVLLVLLLLASVYAFRQKKKAKRAARKSNLFEQWDPDESNSSIPQLKGAKRFTFEEMQNYTKNFSQSNNIGSGGYGKVYRGTLPNGQLIAVKRAQKESIQGGQEFKTEIELLSRVHHKNLVSLLGFCFEQGEQMLVYEYVANGTLTDALSEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKLIKNAIDKTKDLYGLKEMLDPTIELGTTLNGFDKFVDLAMKCVEESSSNRPSMNYVVKEIENMLQLAGSNPHADSASTSSSFNLFVDCGGKHKQPGLGLQHSLLSSDADTALLTLKYGWQNTPPDWVGSDPCGDRWTGIQCSNSRITSLSLASMGLSGQLSSDIGLLSELRILLLINCGFTGSIPDTIGNLERLVFLSLNSNSFSGRIPPAIGTLSNIYWLDLAENQLDGPIPISNGTTPGLDMLHHTKHFHFGMNKLSGNIPSQLFSSEMSLIHALFEGNSLTGSIPSTLGLVKSLEVVRFDGNFLNGPLPLNLNNLTKVTDLFLSNNRIPGPLPNLTGMNALSYLDVSNNSFDPSVFPPWLSTLPSLTTLMMENTQLQGQVPVSLFSLVQLQTVVLKNNQLNGTLDIGTAISNQLELLDLQTNLIEAFDPKIDVSKVEIILAKNPVCQDTGVVRTYCSIAKSNDSYKTPPNNCVPATCSSDQILSPHCKCAYPYTGTLTFRGPSFSGLGNDTVFVNLELSLMQSFQLYETPVDSVSLSNPRKDVDRIQYLELTLQVFPSGQDRFNRSGISGIAFLLSNQTYKPPAMFGPYYYIADTYEHYLDDLGPVASSKSSNIGIIAGAAAGGSVLLVLLLLASVYAFRQKKKAKRATKQWDPDESNSSTPQLKGARRFTFEEMQNYTKNFSQVNNIGSGGYGKVYRGTLPNGELIAVKRAQKESIQGGLEFKTEIELLSRVHHKNLVSLLGFCFEQGEQMLVYEYVANGTLKDALSEYYMTQQLTEKSDVYSFGVLMLELITARKPIERGKYIVKLVKSAIDKTKDIYGLKEILDPTIDLGTTLNGFDKFVDLALQCVAESSSNRPSMNYVVKEIENMLHLAGSNPNAESASSSSSYNVSKGTLHPYDNEYFGSSVLLPRA. 1678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04275 1677 FunFam Leucine-rich repeat protein kinase family protein 600 711 - -
Seca6g04275 1677 SUPERFAMILY L domain-like 44 406 - -
Seca6g04275 1677 Pfam Leucine rich repeat N-terminal domain 871 903 IPR013210 -
Seca6g04275 1677 Pfam Leucine rich repeat N-terminal domain 25 60 IPR013210 -
Seca6g04275 1677 ProSitePatterns Protein kinases ATP-binding region signature. 1452 1474 IPR017441 GO:0005524
Seca6g04275 1677 PANTHER RECEPTOR-LIKE PROTEIN 55 1533 1634 - -
Seca6g04275 1677 SUPERFAMILY Protein kinase-like (PK-like) 1432 1653 IPR011009 -
Seca6g04275 1677 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Seca6g04275 1677 Gene3D Ribonuclease Inhibitor 181 282 IPR032675 -
Seca6g04275 1677 FunFam Leucine-rich repeat family protein 26 181 - -
Seca6g04275 1677 ProSitePatterns Protein kinases ATP-binding region signature. 642 664 IPR017441 GO:0005524
Seca6g04275 1677 Gene3D Transferase(Phosphotransferase) domain 1 722 847 - -
Seca6g04275 1677 Gene3D Transferase(Phosphotransferase) domain 1 1532 1664 - -
Seca6g04275 1677 Pfam Protein tyrosine and serine/threonine kinase 1449 1533 IPR001245 GO:0004672|GO:0006468
Seca6g04275 1677 Pfam Protein tyrosine and serine/threonine kinase 638 723 IPR001245 GO:0004672|GO:0006468
Seca6g04275 1677 FunFam Leucine-rich repeat receptor-like kinase 871 971 - -
Seca6g04275 1677 SUPERFAMILY Protein kinase-like (PK-like) 610 826 IPR011009 -
Seca6g04275 1677 Gene3D Ribonuclease Inhibitor 1031 1098 IPR032675 -
Seca6g04275 1677 Gene3D Ribonuclease Inhibitor 283 426 IPR032675 -
Seca6g04275 1677 Gene3D Ribonuclease Inhibitor 1099 1247 IPR032675 -
Seca6g04275 1677 FunFam Leucine-rich repeat protein kinase family protein 182 281 - -
Seca6g04275 1677 SUPERFAMILY L domain-like 895 1194 - -
Seca6g04275 1677 FunFam Leucine-rich repeat protein kinase family protein 1408 1521 - -
Seca6g04275 1677 ProSiteProfiles Protein kinase domain profile. 1446 1677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04275 1677 Gene3D Phosphorylase Kinase; domain 1 607 711 - -
Seca6g04275 1677 Gene3D Phosphorylase Kinase; domain 1 1416 1521 - -
Seca6g04275 1677 Gene3D Ribonuclease Inhibitor 867 1030 IPR032675 -
Seca6g04275 1677 ProSiteProfiles Protein kinase domain profile. 636 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04275 1677 FunFam Leucine-rich repeat protein kinase family protein 999 1098 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04275 Seca-Chr6 110490545 110506453 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04275 715 843 Receptor kinase-like Gene Family AT5G49760 58.462 7.70e-40 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca6g04275 PK_Tyr_Ser-Thr 1.7e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04275 - - gmx:100780344 1090.49